Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242034g00001 ATGGAGTTGAAGGTCATCATGATAGTAATTCTTGGAGTAGTAGCTGCAGCAAATGTTGTTGACTATAATCAAACCCTTGATGGGTGCCAAAGTGAGTGTGGTGTTCAAATTCCATATCCATTTGGAATCGGAAAATCAAAAACAACCGGCGAGAATTGTTTCATGGAAGAACAATTTGAACTCACTTGCCAAAAGAATTCCATTTTGAAATCAGGAGGGTTCCATGTCACATCCATAAACATCACCAAAGGCCAACTCGAAATGATGGCTCCGGTTTCCAGATACTGCATAGACGGAAGCAATGAAGAAACCACGCTCACCAGTTTTCCTTCGTTCACAGTTTCTGTGAACGAAAACAAGTTCATAAGTGTCGGCTGCGACGCCTACGGCCACCTTAACAGCTCCTATGATGGGAGAATCTATTCAACCGGGTGTATATCAAGATGCTATGGCCATACTGATGATATTGTTAATGGAATGTGTTCCGGATTTGGGTGTTGTCAGATGGATATTCCTCCTAACATGGTGAATGTTTCTTTCCAAGCATCAAGCTTTAGTGATTTCAAGGAATCTTTGAGTTTCAACAACTGCAGCTATTCCTTCATCGTCAAGAATGGAAACTATAGTTTTAACAAGGAGCATTTGAAGAAGATGCCTCTGCATTATAATGAAGTGCCTGTGATCTATGATTGGAGTGTTGGAAATGATGAAACATGTAATGGGGCTTGCAAAAACAATAGCGAGTGTGTGAAATCTAACAGCAATGATGAATCTCGTTACCAATGCCGATGCAAAACAGGGTTTGAAGGAAACCCATATCATCCTCATGGTTGCATAGACATTGATGAATGTGAGAGCGGAAATCATACATGCCTAATAGGTGACCATGAATGCTATAATACAGTTGGATCCTACCAATGTATTTGTCCTAAGGGACAATTTGAAGATGAAAAAGGAACATGCAAAGAGAAGAGTAATAATGAACTTCCCAAGTATGCCATTGGTGGAGGTGCAGGATTCAGTGCTTTCTTTGCAGTGATTTTCTTTCTATACTGGATCTATCATAGAAGAAAACTCATGAAACTAAAACAGAAATTTTTCAAGCAAAATGGCGGTTACTTTTTGCTACAACAACTCTCCACAAGAGGAGAATCCTCTCAAACAGTTCAAATCTTCACAGAAGATGAACTGAAGAAGGCCACAAAGAACTACGATGATAAGCTAATCATTGGCAGAGGAGGTTACGGCACTGTCTTCAAAGGAGTCCTAACCAACAACAGAATTGTGGCAATCAAGAAGTCCAAAATAGTGGACAAAAGCCAAATCGATCAGTTCATCAACGAGGTTGTTGTTTTGTCTCGAATCAATCATCGAAACGTAGTGAAGCTCTTAGGTTGTTGTTTAGAGACAGAAGTTCCTTTACTAGTTTATGAATTTATCAACAATGGTACTCTTTTCAATTTCATCCATCATCACAAGGGTGGAAATGCAAATAGTTTGGTTTGGGGGACCCGTTTGAGAATAGCATCAGAAGCAGCAGGAGCTTTGTCATATTTGCATTCATCAGCAGCCTCAATACCAATCATCCATAGAGATATCAAGAGTGCAAATATTCTCTTAGATAGCACTTACACTGCTAAGGTATCTGATTTTGGAGCTTCAAGATTTGTCCCACAAGATGAAATTGCATTGGCTACAATGGTTCAAGGAACGATTGGATACTTGGATCCTGAGTACATGCAAACGAGCCAATTGACTGAGAAAAGCGATGTCTATAGCTTCGGCGTGGTGCTTGCGGAGCTTCTAACTGGCGAACAACCTCTTTCTTTTGATAGGCCAGAAGAGAAGAGAAGTCTTGCTATATACTTTCTTTCTTGCTTGAAAGCGAATCACTTGTTCGATGCGATTCAGGTTGGGATTCTAAATGAGAAAAACGAGCAACAGATCAAGGAGGTTGCTCTTCTTGCTGCGAAGTGTTTAAGCCTTAAAGGGGAAGATAGGCCAAGTATGAAGGAAGTAGCAATGGAATTGGAAGGAATTAGGAGCATTAATAATGGAGACAACAAGAACCCAGAAGAAACTCAATGCTTGGTTCTTAAAGAGTCTTCATTATCAAGAATACATAAGCATAGTAGCCATCAAAATTATAGGTATGATAGTATCAATCAACTATCAAGTTCCTTTGCAGATGGAAGATGA 2199 0.3984 MELKVIMIVILGVVAAANVVDYNQTLDGCQSECGVQIPYPFGIGKSKTTGENCFMEEQFELTCQKNSILKSGGFHVTSINITKGQLEMMAPVSRYCIDGSNEETTLTSFPSFTVSVNENKFISVGCDAYGHLNSSYDGRIYSTGCISRCYGHTDDIVNGMCSGFGCCQMDIPPNMVNVSFQASSFSDFKESLSFNNCSYSFIVKNGNYSFNKEHLKKMPLHYNEVPVIYDWSVGNDETCNGACKNNSECVKSNSNDESRYQCRCKTGFEGNPYHPHGCIDIDECESGNHTCLIGDHECYNTVGSYQCICPKGQFEDEKGTCKEKSNNELPKYAIGGGAGFSAFFAVIFFLYWIYHRRKLMKLKQKFFKQNGGYFLLQQLSTRGESSQTVQIFTEDELKKATKNYDDKLIIGRGGYGTVFKGVLTNNRIVAIKKSKIVDKSQIDQFINEVVVLSRINHRNVVKLLGCCLETEVPLLVYEFINNGTLFNFIHHHKGGNANSLVWGTRLRIASEAAGALSYLHSSAASIPIIHRDIKSANILLDSTYTAKVSDFGASRFVPQDEIALATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLAELLTGEQPLSFDRPEEKRSLAIYFLSCLKANHLFDAIQVGILNEKNEQQIKEVALLAAKCLSLKGEDRPSMKEVAMELEGIRSINNGDNKNPEETQCLVLKESSLSRIHKHSSHQNYRYDSINQLSSSFADGR 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242034g00001 732 ProSitePatterns Protein kinases ATP-binding region signature. 410 433 IPR017441 GO:0005524
Stsc242034g00001 732 Pfam Wall-associated receptor kinase galacturonan-binding 29 86 IPR025287 GO:0030247
Stsc242034g00001 732 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Stsc242034g00001 732 CDD STKc_IRAK 410 680 - -
Stsc242034g00001 732 SUPERFAMILY EGF/Laminin 274 320 - -
Stsc242034g00001 732 CDD EGF_CA 280 312 - -
Stsc242034g00001 732 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 298 309 IPR000152 -
Stsc242034g00001 732 SMART serkin_6 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242034g00001 732 Gene3D Transferase(Phosphotransferase) domain 1 480 704 - -
Stsc242034g00001 732 ProSiteProfiles EGF-like domain profile. 280 322 IPR000742 -
Stsc242034g00001 732 SMART egfca_6 280 322 IPR001881 GO:0005509
Stsc242034g00001 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Stsc242034g00001 732 Pfam Calcium-binding EGF domain 280 321 IPR001881 GO:0005509
Stsc242034g00001 732 FunFam Fibrillin 2 275 321 - -
Stsc242034g00001 732 SMART egf_5 283 322 IPR000742 -
Stsc242034g00001 732 SMART egf_5 238 279 IPR000742 -
Stsc242034g00001 732 FunFam Wall-associated receptor kinase 2 480 698 - -
Stsc242034g00001 732 Pfam Protein kinase domain 405 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242034g00001 732 ProSitePatterns Calcium-binding EGF-like domain signature. 280 307 IPR018097 GO:0005509
Stsc242034g00001 732 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Stsc242034g00001 732 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242034g00001 732 ProSiteProfiles EGF-like domain profile. 235 271 IPR000742 -
Stsc242034g00001 732 Gene3D Plasmodium vivax P25 domain 228 329 - -
Stsc242034g00001 732 FunFam Wall-associated receptor kinase 2 374 479 - -
Stsc242034g00001 732 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 688 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242034g00001 Stsc-Chr242034 6501 10137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242034g00001 5 698 Receptor kinase-like Gene Family AT1G21230 44.909 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc242034g00001 Pkinase 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242034g00001 - - gmx:100819535 796.578