Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242032g00007 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCCCCTGAGGAAGACGAGAAACTCATTCGTTACATTACTACTCATGGCTATGGCTGTTGGAGTGAAGTCCCTGAGAAAGCTGGGCTTCAAAGGTGTGGAAAGAGTTGTAGGCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACCAGAAGAGGAGAAGTTAATCATAAGTCTCCACGGTGTTGTAGGCAATAGATGGGCTCACATTGCAAGCCACTTGCCTGGTAGAACTGATAATGAAATTAAGAACTACTGGAATTCATGGATCAAGAAGAAGATAAGAAAGCCATCCTCACTCTCTTCTGCTGCACCCGCAACAACTAATAGTGTTGATCATTCTTCTCATCACTTCAGCTATAATAATTATTCTAATTCCAATCAGCTACTAGATCATCATCACCACTTTGGAGGCAACAACAACCAAGATAATCTAACACCAAAGCAACCACTCCATCATCAAGAATCCTTATTTTCTTCAACATACCCACTATTTATGTTTGACACTAGTTCACTAGATGCCACCACCGCCACAACATGTTCTACAACAGACAACAACACCACCTTATTAAGAGTTGATCAGATATTCCAAGATGCTAATGTTGGATTGAGTTCTGAAACATGGAATAATAATAACTTGAGCCACCACCACCACCACAATCAACAAGTTCAAGAACTTGCTCCTCCATCAACAACAAGTTTCACAGTTGCTGTGGGATTGGACACAAACAATTATCTGCCACCACTGATAGAGAACGTGGAGAGCATGGTACCGGTTGAGGTGCAATCTTGTAGCATGGAGGAGGTAGCAGATGCAGCTCTGGAGTGCTTGCAGTTGCAGAGGCACCAAGATCATCATCAGTTAAATGCATGGGTTGAATCCACACACGTACACCAACAATGTCCTAACTTTCTTTTCTGGGACAATGTTGTTGAAGCCCAAATTGGTGGGCAAGAACAACTTGCACCAAATTCTTCATCCAATAAACCTAATACTCTTTCTCCTTTTCCTTTGTGA 1083 0.422 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSSLSSAAPATTNSVDHSSHHFSYNNYSNSNQLLDHHHHFGGNNNQDNLTPKQPLHHQESLFSSTYPLFMFDTSSLDATTATTCSTTDNNTTLLRVDQIFQDANVGLSSETWNNNNLSHHHHHNQQVQELAPPSTTSFTVAVGLDTNNYLPPLIENVESMVPVEVQSCSMEEVADAALECLQLQRHQDHHQLNAWVESTHVHQQCPNFLFWDNVVEAQIGGQEQLAPNSSSNKPNTLSPFPL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242032g00007 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc242032g00007 360 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc242032g00007 360 CDD SANT 69 112 IPR001005 -
Stsc242032g00007 360 FunFam MYB transcription factor 6 66 - -
Stsc242032g00007 360 CDD SANT 17 61 IPR001005 -
Stsc242032g00007 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc242032g00007 360 Gene3D - 68 139 - -
Stsc242032g00007 360 PANTHER MYB DOMAIN PROTEIN 55 1 254 - -
Stsc242032g00007 360 SMART sant 66 114 IPR001005 -
Stsc242032g00007 360 SMART sant 13 63 IPR001005 -
Stsc242032g00007 360 MobiDBLite consensus disorder prediction 341 360 - -
Stsc242032g00007 360 FunFam Transcription factor MYB26 68 140 - -
Stsc242032g00007 360 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc242032g00007 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc242032g00007 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc242032g00007 360 Gene3D - 6 66 - -
Stsc242032g00007 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242032g00007 Stsc-Chr242032 40693 42516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242032g00007 1 332 MYB Transcription Factor Family AT1G63910 50.000 6.43e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc242032g00007 Myb_DNA-binding 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242032g00007 K09422 K02947 gmx:100803556 422.55