Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242032g00001 ATGGTTTCATCATCGAGTGCTGGATTCTACCCAACACCCAACAACCAGATCCATGGAGGAGGAGGGGCCTTTCTGCCTGACCCAGCAGACATGGACATGAAGTGGAAAACCTTGCTGGCCAACAACAACGAACCACCTCCACCTCCTCCTTCTTTTGATCTAATACATCATGCCCCTCATCATCAAAGCCAAGGCCTTTCACTCTCTCTCAGCTCAAACAACCCTTCTTCAATTGCTCTCCAATCTTTCCACCTAATCCAAGAATCTCCAAATATGTATCATCAAGGCCATTACTCTCTCAAGGGATCCAGATTCTTGATACCCGCACAGCACCTTCTCAACGAGTTCTGTAGCCTAGGAACCATCAAGCAACTCAATAATCAACCCATAATCAAGCGCCGTACCAACAACAACAATTCCAATTCCCCCGAGCCCCCACCTCTTACCTCTCTAGAGTTCGTTGAACTGCAGAAGAGAAAGGCTAAGCTCCTTGCCATGCTCCAAGAGGTGGATAGAAGATACTCGCACTACTGCAATCAGATGAAGGGAGTGGTGGCCTCATTTGAGGCGGTGGCCGGGGAGGGTGCGGCCAGCGTGTACTCCGCACTTGCGCTCAAGGCCATGTCTCGTCACTTCAGGTGCTTGAAGGATGGGATACTGGAACAGTTAGAGGCAACTCGGAAGGGGATGGGAGAGAAGGATCCAATTGCACCGGGCACCACCAAGGGCGAAACCCCCTCCCTCAGAATCATTGACCAGGCTTTGAGACAGCAAAGAGCTTTTCACCAACTCTCCTCCATGGAACCTCATCCCTGGAGACCCCAACGTGGCCTTCCTGAACGTTCCGTCTCTCTTCTCCGCGCTTGGCTTTTCGAGCATTTCCTTCACCCGTACCCAAGCGACGTTGATAAACACATTTTAGCACGCCAAACTGGTCTCTCTAGAAGCCAGGTTTCAAATTGGTTTATCAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAAGAGAAGGAGGCTGCGTCCGAGGGAGCAGCTGCAGGTGAAGATTTTCATCAAAACCTATCTTCTCCAAATTCAGATGAGAAGCCTCCTTGCCTACTTCGAATCGACTCGGAATGCATGTCCTCAATCATCAACAACAACCCTGAGGAGGAGCAATATTTAGGGCGAGGAGTGGTGGCAGACACGTTTGGATCGGTGGAGATTGATTTCTCATCATCATCATACCAGAATAACGGTGGAGGTGCGGTTTCTTTGACGCTAGGGTTACAGCAGCACGGTGGAAATGGGGTGAGCTTGGCTTTCCCGCCAGAAAGTGAGGGATCCATGTTCTACTCATCAAGGGATCATCACATGATTGAAGAGTGTCAAGCAGTTCACTACTCTCTTCTGGATGGCGAACCACAAACCATGCCCTACAGTAGCAGTAGTAGTAGTAGGAATTTCATGGGGAGTGGGACTGGGACCCAATTCCTTCATCACTTGCCCGGATAG 1512 0.5013 MVSSSSAGFYPTPNNQIHGGGGAFLPDPADMDMKWKTLLANNNEPPPPPPSFDLIHHAPHHQSQGLSLSLSSNNPSSIALQSFHLIQESPNMYHQGHYSLKGSRFLIPAQHLLNEFCSLGTIKQLNNQPIIKRRTNNNNSNSPEPPPLTSLEFVELQKRKAKLLAMLQEVDRRYSHYCNQMKGVVASFEAVAGEGAASVYSALALKAMSRHFRCLKDGILEQLEATRKGMGEKDPIAPGTTKGETPSLRIIDQALRQQRAFHQLSSMEPHPWRPQRGLPERSVSLLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEAASEGAAAGEDFHQNLSSPNSDEKPPCLLRIDSECMSSIINNNPEEEQYLGRGVVADTFGSVEIDFSSSSYQNNGGGAVSLTLGLQQHGGNGVSLAFPPESEGSMFYSSRDHHMIEECQAVHYSLLDGEPQTMPYSSSSSSRNFMGSGTGTQFLHHLPG 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242032g00001 503 Pfam Associated with HOX 100 219 IPR006563 -
Stsc242032g00001 503 Coils Coil 153 173 - -
Stsc242032g00001 503 FunFam BEL1-like homeodomain protein 4 275 337 - -
Stsc242032g00001 503 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 353 - -
Stsc242032g00001 503 SMART prehox3 94 221 IPR006563 -
Stsc242032g00001 503 SMART HOX_1 272 336 IPR001356 GO:0003677
Stsc242032g00001 503 SUPERFAMILY Homeodomain-like 273 338 IPR009057 -
Stsc242032g00001 503 CDD homeodomain 272 333 IPR001356 GO:0003677
Stsc242032g00001 503 ProSiteProfiles 'Homeobox' domain profile. 269 332 IPR001356 GO:0003677
Stsc242032g00001 503 Pfam Homeobox KN domain 289 328 IPR008422 GO:0003677|GO:0006355
Stsc242032g00001 503 Gene3D - 275 337 - -
Stsc242032g00001 503 MobiDBLite consensus disorder prediction 1 25 - -
Stsc242032g00001 503 MobiDBLite consensus disorder prediction 345 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242032g00001 Stsc-Chr242032 6728 9514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242032g00001 42 501 Homeobox Transcription Factor Family AT5G41410 43.494 2.37e-115 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc242032g00001 POX 7.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242032g00001 - - adu:107479887 634.024