Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242030g00006 ATGGAACTCACCACCATGCTTTACTTGCTTGCTTCATCACTGTTCTTCATTGTTGTTTTCAAATTTTTGCCTTGTTCCAAGAAAGGGAGAGAATTGCCACTCCCTCCAGGCTCCATGGGTTGGCCTTACATCGGAGAAACCTTCCAAATGTACTCTCAAGACCCAAATGTCTTCTTTTCCACAAAACTCAAGAGGTATGGTTCTATATTCAAGTCCCACATTTTGGGATGTCCGTGTGTTATGATAGCAAGCTCAGAAGCTGCAAAATTTGTGCTAAACAAAGCACAATTGTTCAAGCCAACATTCCCAGCTAGCAAAGAGAGGATGTTGGGAAAGCAAGCCATATTCTTCCACCAAGGAGAATACCATGCCAACCTTAGGAGGCTGGTCCTCCGCACCGTCATGCCCGAAGCCATCAAGAACATCGTCACAGACATCGATTCCATTGCCATCGATGCCCTCCAATCCTGCCAAGGAAAACCTATCACCACTTTCCTCGAATTCAAAACCTACACATTCAACGTTGCGCTGCTTTCAATCTTCGGAAAAGACGAGGTTAAGTACAGAGAAGATTTGAAGAGGTGCTACTACACTTTAGAGAAAGGGTACAACTCAATGCCGATAAATGTTCCTGGAACACTGTTCCACAAGGCCATGAAGGCAAGAAAGGAAATCGCTGAGATAGTTGCGAGAATCATGGAAAGAAGGAGAGAAAAGAAACAAGAGAGTTACAATGATTTGCTGGGTTCGTTCATGGCTGAGAAAGCAGGACTCAGCGATGAACAAATAACAGATAACGTCATTGGTGTCATTTTCGCTGCTCGCGACACCACTGCTTCTGTGCTGACGTGGATCGTTAAATACCTCACTGACAATCCAACTGTACTGCAAGCTGTAACTGAAGAGCAGGAATGTATAGTGAAGAGGAAGGAAGAAAGTGGTGAAGAGATAGGACTGAATTGGGAGGATACAAGGAAGATGCCAATGACTTTAAGGGTCATTCAAGAGACTCTAAGGGTTGCTTCAATCTTGTCTTTCACTTTCAGAGAAGCAGTTCAAGATGTTGAGTATCAAGGGTATCTTATACCAAAGGGGTGGAAAGTATTACCACTTTTTAGAAACATACACCATAGTCCTGACAACTTCAAAGACCCAGAAAAGTTTGATCCTTCAAGATTTGAGGTGGCTCCCAAACCCAATACCTTCATGCCATTTGGCAATGGGATTCATGCATGCCCTGGCAATGAATTAGCTAAGTTGGAGATGTTGGTGCTTCTACATCATCTCACCACAAAATACAGGTGGTCTGTGGTAGGTGACAAAAATGGCATCCAATATGGGCCTTTTGCCCTTCCCTTAAATGGCTTGCCCCTAAACTTATACCCAAAATATAAATAA 1398 0.4342 MELTTMLYLLASSLFFIVVFKFLPCSKKGRELPLPPGSMGWPYIGETFQMYSQDPNVFFSTKLKRYGSIFKSHILGCPCVMIASSEAAKFVLNKAQLFKPTFPASKERMLGKQAIFFHQGEYHANLRRLVLRTVMPEAIKNIVTDIDSIAIDALQSCQGKPITTFLEFKTYTFNVALLSIFGKDEVKYREDLKRCYYTLEKGYNSMPINVPGTLFHKAMKARKEIAEIVARIMERRREKKQESYNDLLGSFMAEKAGLSDEQITDNVIGVIFAARDTTASVLTWIVKYLTDNPTVLQAVTEEQECIVKRKEESGEEIGLNWEDTRKMPMTLRVIQETLRVASILSFTFREAVQDVEYQGYLIPKGWKVLPLFRNIHHSPDNFKDPEKFDPSRFEVAPKPNTFMPFGNGIHACPGNELAKLEMLVLLHHLTTKYRWSVVGDKNGIQYGPFALPLNGLPLNLYPKYK 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242030g00006 465 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 405 414 IPR017972 GO:0005506|GO:0016705
Stsc242030g00006 465 PRINTS P450 superfamily signature 273 290 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 PRINTS P450 superfamily signature 403 412 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 PRINTS P450 superfamily signature 332 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 PRINTS P450 superfamily signature 412 423 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 CDD CYP90-like 63 440 - -
Stsc242030g00006 465 PANTHER CYTOCHROME P450 26 30 439 - -
Stsc242030g00006 465 PRINTS E-class P450 group I signature 262 279 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 PRINTS E-class P450 group I signature 412 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 PRINTS E-class P450 group I signature 282 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 PRINTS E-class P450 group I signature 371 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 PRINTS E-class P450 group I signature 402 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 PRINTS E-class P450 group I signature 331 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 Pfam Cytochrome P450 35 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 SUPERFAMILY Cytochrome P450 30 462 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 Gene3D Cytochrome P450 25 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242030g00006 465 FunFam Abscisic acid 8 25 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242030g00006 Stsc-Chr242030 32167 34860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242030g00006 1 458 Cytochrome P450 AT4G19230 69.957 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242030g00006 K09843 - gmx:100170674 769.615