LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242030g00006	ATGGAACTCACCACCATGCTTTACTTGCTTGCTTCATCACTGTTCTTCATTGTTGTTTTCAAATTTTTGCCTTGTTCCAAGAAAGGGAGAGAATTGCCACTCCCTCCAGGCTCCATGGGTTGGCCTTACATCGGAGAAACCTTCCAAATGTACTCTCAAGACCCAAATGTCTTCTTTTCCACAAAACTCAAGAGGTATGGTTCTATATTCAAGTCCCACATTTTGGGATGTCCGTGTGTTATGATAGCAAGCTCAGAAGCTGCAAAATTTGTGCTAAACAAAGCACAATTGTTCAAGCCAACATTCCCAGCTAGCAAAGAGAGGATGTTGGGAAAGCAAGCCATATTCTTCCACCAAGGAGAATACCATGCCAACCTTAGGAGGCTGGTCCTCCGCACCGTCATGCCCGAAGCCATCAAGAACATCGTCACAGACATCGATTCCATTGCCATCGATGCCCTCCAATCCTGCCAAGGAAAACCTATCACCACTTTCCTCGAATTCAAAACCTACACATTCAACGTTGCGCTGCTTTCAATCTTCGGAAAAGACGAGGTTAAGTACAGAGAAGATTTGAAGAGGTGCTACTACACTTTAGAGAAAGGGTACAACTCAATGCCGATAAATGTTCCTGGAACACTGTTCCACAAGGCCATGAAGGCAAGAAAGGAAATCGCTGAGATAGTTGCGAGAATCATGGAAAGAAGGAGAGAAAAGAAACAAGAGAGTTACAATGATTTGCTGGGTTCGTTCATGGCTGAGAAAGCAGGACTCAGCGATGAACAAATAACAGATAACGTCATTGGTGTCATTTTCGCTGCTCGCGACACCACTGCTTCTGTGCTGACGTGGATCGTTAAATACCTCACTGACAATCCAACTGTACTGCAAGCTGTAACTGAAGAGCAGGAATGTATAGTGAAGAGGAAGGAAGAAAGTGGTGAAGAGATAGGACTGAATTGGGAGGATACAAGGAAGATGCCAATGACTTTAAGGGTCATTCAAGAGACTCTAAGGGTTGCTTCAATCTTGTCTTTCACTTTCAGAGAAGCAGTTCAAGATGTTGAGTATCAAGGGTATCTTATACCAAAGGGGTGGAAAGTATTACCACTTTTTAGAAACATACACCATAGTCCTGACAACTTCAAAGACCCAGAAAAGTTTGATCCTTCAAGATTTGAGGTGGCTCCCAAACCCAATACCTTCATGCCATTTGGCAATGGGATTCATGCATGCCCTGGCAATGAATTAGCTAAGTTGGAGATGTTGGTGCTTCTACATCATCTCACCACAAAATACAGGTGGTCTGTGGTAGGTGACAAAAATGGCATCCAATATGGGCCTTTTGCCCTTCCCTTAAATGGCTTGCCCCTAAACTTATACCCAAAATATAAATAA	1398	0.4342	MELTTMLYLLASSLFFIVVFKFLPCSKKGRELPLPPGSMGWPYIGETFQMYSQDPNVFFSTKLKRYGSIFKSHILGCPCVMIASSEAAKFVLNKAQLFKPTFPASKERMLGKQAIFFHQGEYHANLRRLVLRTVMPEAIKNIVTDIDSIAIDALQSCQGKPITTFLEFKTYTFNVALLSIFGKDEVKYREDLKRCYYTLEKGYNSMPINVPGTLFHKAMKARKEIAEIVARIMERRREKKQESYNDLLGSFMAEKAGLSDEQITDNVIGVIFAARDTTASVLTWIVKYLTDNPTVLQAVTEEQECIVKRKEESGEEIGLNWEDTRKMPMTLRVIQETLRVASILSFTFREAVQDVEYQGYLIPKGWKVLPLFRNIHHSPDNFKDPEKFDPSRFEVAPKPNTFMPFGNGIHACPGNELAKLEMLVLLHHLTTKYRWSVVGDKNGIQYGPFALPLNGLPLNLYPKYK	465

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242030g00006	465	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	405	414	IPR017972	GO:0005506\|GO:0016705
	Stsc242030g00006	465	PRINTS	P450 superfamily signature	273	290	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc242030g00006	465	PRINTS	P450 superfamily signature	403	412	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc242030g00006	465	PRINTS	P450 superfamily signature	332	343	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc242030g00006	465	PRINTS	P450 superfamily signature	412	423	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc242030g00006	465	CDD	CYP90-like	63	440	-	-
	Stsc242030g00006	465	PANTHER	CYTOCHROME P450 26	30	439	-	-
	Stsc242030g00006	465	PRINTS	E-class P450 group I signature	262	279	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc242030g00006	465	PRINTS	E-class P450 group I signature	63	82	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc242030g00006	465	PRINTS	E-class P450 group I signature	412	435	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

Showing 1 to 10 of 18 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242030g00006	Stsc-Chr242030	32167	34860	Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242030g00006	1	458	Cytochrome P450	AT4G19230	69.957	0.0	662

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242030g00006	K09843		-	gmx:100170674	769.615

Showing 1 to 1 of 1 entries