Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242030g00001 ATGTCTGAAAACTCCATAGGGCCACCAACAGAGATGTCTGAGCTTCATAACTCAATAAATGTTCCTTCAAATGAACAACAACAACAATCTTCACCAAAACTCTCCTTGTATCCCATAACTTTGAGGTTTGAGGAATTGGTGTATAAAATAAAAGCAGAGAAGAAAGAGAAAACCATATTGAAAGGAATCACAGGCATGGTTTTCCCAGGTGAAATCTTAGCCATGTTAGGTCCTTCAGGAAGTGGCAAAACCACACTCCTCACGGCACTCGGCGGCCGCCTCACCGGCAACAAACTCACCGGAAAGATCACATACAACAACCAACCCTTCTCAGGCACCATAAAAAGAAGAACAGGTTTTGTAGCACAGGATGATGTTCTATACCCTCACCTCACTGTTCTTGAAACACTTTTCTTCACTGCAATGTTAAGGCTTCCAAATAGCATAGCAAAAGAAGAGAAACTCCAGCATGTGGAGCATGTTATCAATGAACTAGGATTGAGTAGGTGCAAAGATAGCATGATTGGAGGGCCACTTTTGAGAGGGATTTCAGGTGGGGAGAGAAAAAGGGTTAGCATTGGACAAGAAATGTTGATCAATCCAAGCCTTTTGCTTCTTGATGAACCAACCTCTGGTTTGGATTCAACAACAGCATTGAAGATAGTGAACACTGTTAAGAAGTTGGCAAGTGGTGGAAGAAGTGTGGTTATGACAATTCATCAACCATCTAGTAGGCTATACCATATGTTTGATAAGGTTGTGTTGCTCTCTGAAGGTTCTCCAATTTACTATGGCCTTGCTTCATCTGCAATGGATTACTTTCACTCTATTGGTTTTACCACTTCCATGACAGTTAATCCTGCTGATCTTTTGCTTGACCTTGCCAATGGGATTGGCCCAGACTGTAAGAATGCAATAGATCAAAGTGAAAGCCACGAAGCAGAAAGGAAAGTGGTGAGGGAAGCTCTAATATCTGCTTATGATAAGAATATAGCTACACAGCTTAAAGCTGAACTTTGTAGCAGCTTGGAGGTGAATAACTACAATAATGATGTCACAAAAGATGCTTTTGCAAAGAAGCAGAGAAGAAGAGATTGGGAATGGAGTACAAGCTGGTGGGATCAGTTGAAGGTGCTGCTGCAAAGGGGTCTAAGGGAGAGAAGGTATGAAGCCTTCAACAGGCTTAGAATATTCCAAGTTACAAGTGTTGCTTTTCTTGGTGGACTCTTGTGGTGGCAAACTCCACAATCTCACATTGGAGACAGAATAGCACTGCTGTTTTTCTTCTCTGTTTTCTGGGGATTCTACCCACTCTACAATGCAGTGTTCACATTCCCACAAGAGAGAAGAATGCTAATAAAGGAAAGATCTTCAGGAATGTACAAACTATCATCCTACTTCATGGCAAGGACCATAGTTGACTTACCCTTAGAACTTGCACTCCCAACTTCATTTGTCATCATAATCTATTGGATGGGAGGCCTTAACCCTAACCCTATAACCTTCATCCTTTCCCTCCTTGTTGTCCTTTATAGTGTCCTTGTTTCCCAAAGTCTAGGATTGGCATTTGGTGCAATACTAATGGAGGTTAAACAAGCAACTACATTGGCTTCTGTTACAACACTTGTGTTCTTGATTGCTGGAGGATACTATATTCAACATATTCCTCCATTTATAGAGTGGTTGAAGTACTTGAGTTATAGCTACTATTGTTACAAGCTGCTTCTTGGTGTTCAATATAGTGAAGGTGATTATTATGAGTGCTCTAAAGGGGTGTTTTGTAGGGTTGGGGATTTTCCACCTATTAAATCAATTGGTGGGTTGAATCATTTGTGGGTTGATGTTTCTATTATGGCACTTATGTTGGTGGGTTATAGGCTAATTGCATATTTAGCACTTCATAGGGTGAGATAG 1914 0.4101 MSENSIGPPTEMSELHNSINVPSNEQQQQSSPKLSLYPITLRFEELVYKIKAEKKEKTILKGITGMVFPGEILAMLGPSGSGKTTLLTALGGRLTGNKLTGKITYNNQPFSGTIKRRTGFVAQDDVLYPHLTVLETLFFTAMLRLPNSIAKEEKLQHVEHVINELGLSRCKDSMIGGPLLRGISGGERKRVSIGQEMLINPSLLLLDEPTSGLDSTTALKIVNTVKKLASGGRSVVMTIHQPSSRLYHMFDKVVLLSEGSPIYYGLASSAMDYFHSIGFTTSMTVNPADLLLDLANGIGPDCKNAIDQSESHEAERKVVREALISAYDKNIATQLKAELCSSLEVNNYNNDVTKDAFAKKQRRRDWEWSTSWWDQLKVLLQRGLRERRYEAFNRLRIFQVTSVAFLGGLLWWQTPQSHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYKLSSYFMARTIVDLPLELALPTSFVIIIYWMGGLNPNPITFILSLLVVLYSVLVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQHIPPFIEWLKYLSYSYYCYKLLLGVQYSEGDYYECSKGVFCRVGDFPPIKSIGGLNHLWVDVSIMALMLVGYRLIAYLALHRVR 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242030g00001 637 CDD ABCG_EPDR 38 265 - -
Stsc242030g00001 637 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 283 IPR003439 GO:0005524
Stsc242030g00001 637 ProSitePatterns ABC transporters family signature. 183 197 IPR017871 GO:0005524|GO:0016887
Stsc242030g00001 637 SMART AAA_5 69 260 IPR003593 GO:0016887
Stsc242030g00001 637 Pfam ABC-2 type transporter 375 580 IPR013525 GO:0016020|GO:0140359
Stsc242030g00001 637 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 630 - -
Stsc242030g00001 637 Pfam ABC transporter 60 211 IPR003439 GO:0005524
Stsc242030g00001 637 Pfam ABC-2 type transporter 240 327 IPR043926 GO:0140359
Stsc242030g00001 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 279 IPR027417 -
Stsc242030g00001 637 FunFam ABC transporter G family member 22 47 277 - -
Stsc242030g00001 637 Gene3D - 40 277 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242030g00001 Stsc-Chr242030 2094 4876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242030g00001 59 260 Calmodulin-binding Proteins AT2G36910 28.095 1.58e-11 65.9