Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242029g00007 ATGATTGCATCATTTGTTACAATCATAACTGTTGTAAAAACAGTACTACTTGTGAGTGTGGTGAACTCATATCCAGAAGCCGATAAGATAAGCAGTTTGCCAGGGCAGCCACGTGTCACATTCCAGCAATATGGCGGGTACATTACTGTGGATGATCATCAAGATAGAGCTTTGTTTTATTACTTTGTTGAGGCTCAATCAAACCCTGCTTCCAAACCACTCGTTCTTTGGTTGAATGGAGGGCCTGGTTGTTCATCGGTTGGAGTTGGAGCTTTTGCTGAAAATGGTCCTTTCAGACCGGAGGCAAATATGCTATATTTGGAATCACCAGCTGGAGTTGGTTTCTCCTACTCTAGCAATCAATCTTTCTATGACTTGGTTACAGATGAGATTACAGCAAGGGATAATCTTGTATTCTTAGAGCGGTGGTTTGCTAAATTTCCCGAGTACACAAAAAACGACTTCTTTATTACTGGGGAGAGCTATGCAGGTCACTATATTCCGCAACTTGCATCTCTTATTATTCAATCCAACACCACCTTCAGTGTTAATCTTAAGGGCATAGCGTTAGGGAATCCTCTACTGGATTTTGATGTTGACCTGAACTCGGAAGCGGAATATTTATGGTCTCATGGTCTAATATCTGATTCAACATTTGAACTCTATAATACAGTATGTAACTCATCTCAGATTATGAGAGAACAAATTGATGGAAAGGTTAGTGAAGATTGTGCAAGAGTTGAGAATGTATCTTCCACTGAGATCTCCAATTATATTGATCAATATGATGTCACTCTTGATGTTTGTTTGTCACCGGCCAAACAACAAGTTTATATGCTCATGAATCAAATGAATGCGACACAAAATGTAGATGTTTGTGTGGGAGATAAATTGGTGGTGTACTTAAATAGGGAAGATGTGCAAGAAGCACTCCATGCTAGGCTTGTTGGAGTCCCCAAATGGTCAACTTGCAGCAAGGTTCTAAATTATGACTATCATAATCTAGAAATACCAACACTTCCTCTTCTAGCTACATTTGTTGAGTTAGGCATTCGGGTTCTTGTATACAGTGGAGACCAAGATTCAGTGATCCCATTAATCGGATCTAGATTTCTGGTGAATGGATTAGCCAGAGAAATTAGACTCAATACGACAGTGCCCTATAGAGTCTGGTTCGAGGGAAAACAGGTAGCGGGATGGACACAAGAATATGGAAACATATCATATGCGACAGTGAGGGGAGCAGCTCACGAAGTTCCATTCTCTCAACCAGCAAGATCTTTGGTGCTATTTCAAGCATTTCTTCAAGGAAACCCACTTCCCAGTTCCCAATAA 1335 0.4052 MIASFVTIITVVKTVLLVSVVNSYPEADKISSLPGQPRVTFQQYGGYITVDDHQDRALFYYFVEAQSNPASKPLVLWLNGGPGCSSVGVGAFAENGPFRPEANMLYLESPAGVGFSYSSNQSFYDLVTDEITARDNLVFLERWFAKFPEYTKNDFFITGESYAGHYIPQLASLIIQSNTTFSVNLKGIALGNPLLDFDVDLNSEAEYLWSHGLISDSTFELYNTVCNSSQIMREQIDGKVSEDCARVENVSSTEISNYIDQYDVTLDVCLSPAKQQVYMLMNQMNATQNVDVCVGDKLVVYLNREDVQEALHARLVGVPKWSTCSKVLNYDYHNLEIPTLPLLATFVELGIRVLVYSGDQDSVIPLIGSRFLVNGLAREIRLNTTVPYRVWFEGKQVAGWTQEYGNISYATVRGAAHEVPFSQPARSLVLFQAFLQGNPLPSSQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242029g00007 444 FunFam Carboxypeptidase 23 441 - -
Stsc242029g00007 444 Pfam Serine carboxypeptidase 35 437 IPR001563 GO:0004185|GO:0006508
Stsc242029g00007 444 SUPERFAMILY alpha/beta-Hydrolases 31 440 IPR029058 -
Stsc242029g00007 444 PRINTS Carboxypeptidase C serine protease (S10) family signature 107 117 IPR001563 GO:0004185|GO:0006508
Stsc242029g00007 444 PRINTS Carboxypeptidase C serine protease (S10) family signature 143 168 IPR001563 GO:0004185|GO:0006508
Stsc242029g00007 444 PRINTS Carboxypeptidase C serine protease (S10) family signature 407 420 IPR001563 GO:0004185|GO:0006508
Stsc242029g00007 444 ProSitePatterns Serine carboxypeptidases, serine active site. 157 164 IPR018202 GO:0004185
Stsc242029g00007 444 Gene3D alpha/beta hydrolase 22 441 IPR029058 -
Stsc242029g00007 444 FunFam Carboxypeptidase 339 437 - -
Stsc242029g00007 444 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 424 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242029g00007 Stsc-Chr242029 41944 44290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242029g00007 301 440 Calmodulin-binding Proteins AT2G22960 32.624 3.62e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242029g00007 K16297 - gmx:100819973 629.017