Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242029g00006 ATGGCGAAGCGACTTGTTCCGTTGTTGAATCGGGTTCTCATCGAGAAGATCGTGCCTCCATCCAAAACCAACGCCGGCATCTTGTTGCCCGAGAAATCCACCAAGCTGAATTCTGGAAAAGTAGTTGCGGTTGGACCTGGTGTTCGCAGTAAGGAAGGGAATCTAATTCCGGTTTCTGTTAAAGAAGGCGACACCGTGCTTTTGCCTGAGTACGGCGGAACTGAGGTCAACCTCGCTGATAAACAGTATCATCTTTACAGAGATGAAGACATACTGGGGACACTGCATGATTGA 294 0.4864 MAKRLVPLLNRVLIEKIVPPSKTNAGILLPEKSTKLNSGKVVAVGPGVRSKEGNLIPVSVKEGDTVLLPEYGGTEVNLADKQYHLYRDEDILGTLHD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242029g00006 97 FunFam 10 kDa chaperonin, mitochondrial 1 97 - -
Stsc242029g00006 97 Pfam Chaperonin 10 Kd subunit 5 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc242029g00006 97 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc242029g00006 97 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc242029g00006 97 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc242029g00006 97 PRINTS 10kDa chaperonin signature 82 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc242029g00006 97 SUPERFAMILY GroES-like 3 96 IPR011032 -
Stsc242029g00006 97 Gene3D GroES chaperonin 1 97 IPR037124 GO:0006457
Stsc242029g00006 97 CDD cpn10 4 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc242029g00006 97 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc242029g00006 97 SMART Cpn10_2 4 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242029g00006 Stsc-Chr242029 40316 41170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242029g00006 7 96 Calmodulin-binding Proteins AT5G20720 38.462 1.02e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242029g00006 K04078 - ncol:116262110 177.948