Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242029g00003 ATGGATCACCACCATAACAACAACTCTGATCTCTTCCAACTCCTTGCTGCCTCCGGTGCCGCAGCTGGTTATTACCACCCGGCTTCTATGTTCATGATGGATCATCAATTATCCCCTGATGATGATAACATGAGCGCCGTAGAGATAGAACAACCCTCTCATCATCATCATCAACAACAAGAACATCAAGATAGAGCACTCGCCGCCCTCAGAAACCACAAAGAAGCTGAGAAGAGACGCAGGGAGAGAATCAATTCCCACCTCGCTCGCCTTCGCACTCTTCTCCCTTGCAACTCCAAGACTGATAAAGCTTCTCTTCTTGCAAAGGTAGTTCAGAGACTCAAAGAATTAAAACAACAAACATCACAAATCATCACCGAATTCGAAACCCTACCCTCCGAAACCGACGAGATCACCGTCCTCGCCGACGCCGCGGCCCACGGAGGCCTCATATTCAAGGCCTCCCTCTGCTGCGAGGACCGCTCCGACCTCATCCCTGATCTCATCGAGATCCTCAAGTCTCTGCACCTCAAGACGCTGAGGGCAGAAATGGCAACCCTAGGCGGAAGAACTCGCAACGTTCTGGTGGTTGCCGCCGATAAAGAACACAACAGCATAGAGTCTATTCATTTTCTTCAGAACTCGTTGAAATCATTGCTTGAACGCTCTGGTTCCTCTGATAGGTCCAAACGACGCCGTGCCATGGATCGAACATGA 717 0.5007 MDHHHNNNSDLFQLLAASGAAAGYYHPASMFMMDHQLSPDDDNMSAVEIEQPSHHHHQQQEHQDRALAALRNHKEAEKRRRERINSHLARLRTLLPCNSKTDKASLLAKVVQRLKELKQQTSQIITEFETLPSETDEITVLADAAAHGGLIFKASLCCEDRSDLIPDLIEILKSLHLKTLRAEMATLGGRTRNVLVVAADKEHNSIESIHFLQNSLKSLLERSGSSDRSKRRRAMDRT 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242029g00003 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Stsc242029g00003 238 CDD bHLH_AtAIG1_like 64 143 - -
Stsc242029g00003 238 Pfam Helix-loop-helix DNA-binding domain 72 117 IPR011598 GO:0046983
Stsc242029g00003 238 Coils Coil 59 79 - -
Stsc242029g00003 238 Gene3D - 62 127 IPR036638 GO:0046983
Stsc242029g00003 238 FunFam transcription factor bHLH30 63 126 - -
Stsc242029g00003 238 SMART finulus 74 123 IPR011598 GO:0046983
Stsc242029g00003 238 PANTHER TRANSCRIPTION FACTOR BHLH30 45 235 IPR045847 GO:0003700|GO:0006355
Stsc242029g00003 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 141 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242029g00003 Stsc-Chr242029 14076 14792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242029g00003 63 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 74.251 1.08e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242029g00003 HLH 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242029g00003 - - gmx:100802566 276.174