Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242024g00005 ATGGTGGAGAGCGAGCAAATCTCTCAAAGGAAGTTCTTGCTGCTTGTGAGAGCATTGAATGGCAGAAAGGTGGATGAATTGGACAAAGCGATTGCTGTTGCAGCTAGGGATCCTTCTTGGTATGGCATTGATGAGGTCGAGATTGAAAACCGGAGAAGGTGGACCAGCGGTGCTCGGACTCAGGTGCGCTCAATGAAGAATACAGTGGAAGCTGGAAAGGCCTTGAATCTGACGAACCATGCAAGTGTGAATGGGATGCGCAGGGAATTAATGAGGCTTCCTAATTCACATCAAGTTGATACGTCCAACCAGTATCCTGCCAACAATAACGATGATTTCATTGAATCAGAATCTGACAGACAGATGCTGCTTATGAAGCAACAGGATGAGGAGTTGGATGAGCTTAGTATAAGTGTACAAAAAATTGGAGGTATTGGACTTACGATACATGAAGAACTCCTTGCACAGGAAAATATTATAGATGATCTCGGGAATGAGATGGACAGTACATCCAATCGTCTAGATTTTGTACAAAAAAAAGTGGCAATGGTGATGAAGAAGGCTAGTGCAAAGGGTCAGATCATGATGATATTGGGTTTGCTGGCACTGTTTATTTTCCTCTTCATCTTGGTGTTCTTCACCTAA 645 0.4341 MVESEQISQRKFLLLVRALNGRKVDELDKAIAVAARDPSWYGIDEVEIENRRRWTSGARTQVRSMKNTVEAGKALNLTNHASVNGMRRELMRLPNSHQVDTSNQYPANNNDDFIESESDRQMLLMKQQDEELDELSISVQKIGGIGLTIHEELLAQENIIDDLGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242024g00005 214 FunFam syntaxin-61 isoform X1 125 186 - -
Stsc242024g00005 214 Pfam SNARE domain 159 210 IPR000727 -
Stsc242024g00005 214 CDD SNARE_Qc 125 182 - -
Stsc242024g00005 214 Coils Coil 160 180 - -
Stsc242024g00005 214 SMART tSNARE_6 117 184 IPR000727 -
Stsc242024g00005 214 PANTHER GOLGI SNARE BET1-RELATED 97 211 - -
Stsc242024g00005 214 Gene3D - 129 193 - -
Stsc242024g00005 214 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 122 184 IPR000727 -
Stsc242024g00005 214 SUPERFAMILY t-snare proteins 23 69 IPR010989 GO:0016020|GO:0016192
Stsc242024g00005 214 SUPERFAMILY SNARE fusion complex 120 184 - -
Stsc242024g00005 214 Pfam Syntaxin 6, N-terminal 23 66 IPR015260 GO:0016020|GO:0048193
Stsc242024g00005 214 Gene3D - 15 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242024g00005 Stsc-Chr242024 20357 23272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242024g00005 22 214 SNARE and Associated Proteins AT1G28490 69.430 6.19e-95 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242024g00005 K08500 - tcc:18596770 274.633