Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242024g00002 ATGGGTGCTTGTGTGAGTAGAAGAAGAACAAGTTCAAAAGCACAAGCACCCAAACCATCTGATGAAACTTCAGAATCAATTCTTGGGATTCCATTTGAGCACATTGGCAAGTACTACACTTTTGGGAAGGAATTAGGGAGAGGAAACTGTGGTGTGACACATTTGTGCACTGAGAGAAAAAGTGGCTTGCAATATGCATGCAAATCAATCTCAAAGAAGAAGCTTCTATGCAGAAGTGGTAATTACAAAGATGCCCTTAAGAAGGAGATCCAAGTCATGAAGCATTTGAGTGGCCAACCAAATGTTGCAGAGTTCAAGAGTGTTTTTGAGGATTCTCTTTATGTTCATATTGTTATGGAGTTGTGTTCAGGTGGTGATCTTCTCCAAAGGATCATGCAGAAGGGGCATTACAATGAAAGAGATGCTGCTTCATTGTGTAAACAAATTGTTACAATTGTTCATCATTGCCATTTCATGGGTGTTATGCATAGGGATCTCAAACCAGAGAATCTCTTGTTTTCTTCTAAGGGTGATGATGCAATTCTTAAGGCCATTGATTTTGGTCACTCCTCTTTCATTGAACAAGGAGAGAAATATGCTGATGTTCTTGGAAGTCCATACTATATTGCTCCAGAAGTTCTAAAAGGCAAACATGGAAAAGAAGCAGATATATGGAGTGCAGGAGTTATATTGTATACCTTACTCAGTGGCATGCCTCCATTTTGGGCAGATAAAGAAGAGGGAATATTCAGAGCTATACTACTCGGTCATATCGATTTTACTAGTCGTCCATGGCCGAAAATATCGAAGAATGCTAAGGACCTTGTGTCTAAGATGCTCACACTCGATCCGGAGAGACGGATTACATCTGCTGAGGTGCTAGAGCACAATTGGATTAAAGAAAATGTGAAAGCTTCTCATCATCACAAGCCAATGGACAATGCAATCCTTTGCAGAATGAATGAATTCAGAGAAATGAATATGCTAAAGAGACTTTCCCTCAAAGTTATTGCACAAAATCTTCCTAAGGAGGAGATCCAAGGTTTGAAGACAATGTTTTCAAATATGGACACTTATAATGATGGTGCAATCACCACTGAAGAATTGAAGGCAGGAATGCAACAACTTGGTTCAAATTTTACTGATTCTGAAGCTCAACAGCTTATGGATGCTGTTGATATGGATAGAAATGGAACTTTTGATTGCATGGAGTTCATCACTGCTGCAATGCATAGGCATAGGTTAAAAAGAGATAAAAATCTTTACAAGGCCTTCCAATATTTTAATATAGACAAGACTGGGTTTATTACAATAGATAATCTGAAAACACTGATGAAAGAGTTTGGTGCCAATGATGAAGTCACAATCAATGAAATAATGTCTAAAGTTGATACAGATAATGATGGTAGAATAAGCTATGAAGAATTTTGCACAATGATGATCAATTAG 1449 0.3803 MGACVSRRRTSSKAQAPKPSDETSESILGIPFEHIGKYYTFGKELGRGNCGVTHLCTERKSGLQYACKSISKKKLLCRSGNYKDALKKEIQVMKHLSGQPNVAEFKSVFEDSLYVHIVMELCSGGDLLQRIMQKGHYNERDAASLCKQIVTIVHHCHFMGVMHRDLKPENLLFSSKGDDAILKAIDFGHSSFIEQGEKYADVLGSPYYIAPEVLKGKHGKEADIWSAGVILYTLLSGMPPFWADKEEGIFRAILLGHIDFTSRPWPKISKNAKDLVSKMLTLDPERRITSAEVLEHNWIKENVKASHHHKPMDNAILCRMNEFREMNMLKRLSLKVIAQNLPKEEIQGLKTMFSNMDTYNDGAITTEELKAGMQQLGSNFTDSEAQQLMDAVDMDRNGTFDCMEFITAAMHRHRLKRDKNLYKAFQYFNIDKTGFITIDNLKTLMKEFGANDEVTINEIMSKVDTDNDGRISYEEFCTMMIN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242024g00002 482 FunFam Calcium-dependent protein kinase 5 127 307 - -
Stsc242024g00002 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Stsc242024g00002 482 SUPERFAMILY Protein kinase-like (PK-like) 30 315 IPR011009 -
Stsc242024g00002 482 MobiDBLite consensus disorder prediction 8 22 - -
Stsc242024g00002 482 SMART serkin_6 39 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242024g00002 482 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Stsc242024g00002 482 ProSiteProfiles EF-hand calcium-binding domain profile. 451 482 IPR002048 GO:0005509
Stsc242024g00002 482 ProSiteProfiles EF-hand calcium-binding domain profile. 416 450 IPR002048 GO:0005509
Stsc242024g00002 482 SMART efh_1 455 482 IPR002048 GO:0005509
Stsc242024g00002 482 SMART efh_1 384 412 IPR002048 GO:0005509
Stsc242024g00002 482 SMART efh_1 420 448 IPR002048 GO:0005509
Stsc242024g00002 482 SMART efh_1 348 376 IPR002048 GO:0005509
Stsc242024g00002 482 Gene3D Phosphorylase Kinase; domain 1 30 122 - -
Stsc242024g00002 482 Gene3D Transferase(Phosphotransferase) domain 1 123 322 - -
Stsc242024g00002 482 Pfam Protein kinase domain 39 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242024g00002 482 ProSiteProfiles EF-hand calcium-binding domain profile. 344 379 IPR002048 GO:0005509
Stsc242024g00002 482 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Stsc242024g00002 482 CDD STKc_CAMK 39 298 - -
Stsc242024g00002 482 SUPERFAMILY EF-hand 340 480 IPR011992 -
Stsc242024g00002 482 Gene3D - 323 480 - -
Stsc242024g00002 482 Gene3D - 342 410 - -
Stsc242024g00002 482 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 476 - -
Stsc242024g00002 482 ProSiteProfiles Protein kinase domain profile. 39 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242024g00002 482 Pfam EF-hand domain pair 361 409 IPR002048 GO:0005509
Stsc242024g00002 482 CDD EFh 423 480 IPR002048 GO:0005509
Stsc242024g00002 482 Pfam EF-hand domain pair 419 480 IPR002048 GO:0005509
Stsc242024g00002 482 FunFam Calmodulin 1 338 482 - -
Stsc242024g00002 482 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242024g00002 Stsc-Chr242024 13361 15969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242024g00002 16 480 EF-hand Containing Proteins AT3G20410 61.075 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc242024g00002 Pkinase 2.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242024g00002 K13412 - qsa:O6P43_021169 619.772