Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242024g00001 ATGGGTGTGATGCATAGAGATCTTAAGCCAGAGAATTTCTTGTTGTCCAGTAAGGATGACAAGGCACTTCTCAAGGCCACAGATTTCGGCCTTTCGGTATTCATTGATGAAGGAAAGGTGTATCGCGATATAGTTGGAAGTGCTTATTATGTTGCCCCGGAAGTTCTACGCCGTAGATACGGAAAGGAAATAGATGTATGGAGTGCAGGAGTGATATTATATATCTTACTCAGTGGTGTGCCTCCATTCTGGGCAGAGACTGAAAAGGGAATATTTGATGCCATATTGGAAGGCCATATTGATTTCGAAAGCGCCCCGTGGCCAAGCATATCGAATAGTGCTAAGGACCTCGTTCGTAAGATGCTTACACAGGACCCGAAGAAACGTATCACTTCGGCTCAGGTTCTTGAGCACCCATGGATTAGAGAAGGTGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTTAGAGCAATGAATAAACTAAAGAAACTTGCACTCAAGGTCATAGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGTTTAAAGGCAATGTTTACAAATATCGACACTGACAACAGCGGTACAATCACATATGAGGAACTAAGGGCCGGATTGCAACGACTTGGATCGAAACTCACTGAAGCTGAAGTTCGGCAGCTGATGGATGCTGCTGATGTAGATGGAAACGGCAGTATCGACTACATCGAATTCATCACTGCTACAATGCATAGACATAGGTTAGAAAGAGATGAGCATCTTTACAAGGCTTTCCAGTATTTTGATAAAGACAACAGCGGGTTTATTACAAGAGATGAGCTAGAATCAGCCATGAAGGAATATGGTATGGGTGATGAAGCCACAATCAAGGAAATCATATCAGAAGTTGATACAGATAATGATGGTAGAATCAACTATGAAGAATTTGTTGCAATGATGAGGAGTGGAACAACTCATCAAGGGGGAAAACTATTCTAA 999 0.4214 MGVMHRDLKPENFLLSSKDDKALLKATDFGLSVFIDEGKVYRDIVGSAYYVAPEVLRRRYGKEIDVWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESAPWPSISNSAKDLVRKMLTQDPKKRITSAQVLEHPWIREGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGTITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGSIDYIEFITATMHRHRLERDEHLYKAFQYFDKDNSGFITRDELESAMKEYGMGDEATIKEIISEVDTDNDGRINYEEFVAMMRSGTTHQGGKLF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242024g00001 332 Gene3D Transferase(Phosphotransferase) domain 1 1 145 - -
Stsc242024g00001 332 FunFam Calcium-dependent protein kinase SK5 51 146 - -
Stsc242024g00001 332 ProSiteProfiles EF-hand calcium-binding domain profile. 184 219 IPR002048 GO:0005509
Stsc242024g00001 332 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 316 - -
Stsc242024g00001 332 ProSiteProfiles EF-hand calcium-binding domain profile. 292 326 IPR002048 GO:0005509
Stsc242024g00001 332 ProSitePatterns EF-hand calcium-binding domain. 269 281 IPR018247 -
Stsc242024g00001 332 Gene3D - 148 326 - -
Stsc242024g00001 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 3 15 IPR008271 GO:0004672|GO:0006468
Stsc242024g00001 332 FunFam Calcium-dependent protein kinase 1 149 324 - -
Stsc242024g00001 332 ProSitePatterns EF-hand calcium-binding domain. 233 245 IPR018247 -
Stsc242024g00001 332 CDD EFh 263 321 IPR002048 GO:0005509
Stsc242024g00001 332 Pfam EF-hand domain pair 259 321 IPR002048 GO:0005509
Stsc242024g00001 332 Pfam EF-hand domain pair 189 249 IPR002048 GO:0005509
Stsc242024g00001 332 ProSitePatterns EF-hand calcium-binding domain. 304 316 IPR018247 -
Stsc242024g00001 332 ProSitePatterns EF-hand calcium-binding domain. 197 209 IPR018247 -
Stsc242024g00001 332 SUPERFAMILY EF-hand 180 320 IPR011992 -
Stsc242024g00001 332 ProSiteProfiles EF-hand calcium-binding domain profile. 220 255 IPR002048 GO:0005509
Stsc242024g00001 332 ProSiteProfiles EF-hand calcium-binding domain profile. 256 291 IPR002048 GO:0005509
Stsc242024g00001 332 SMART efh_1 260 288 IPR002048 GO:0005509
Stsc242024g00001 332 SMART efh_1 295 323 IPR002048 GO:0005509
Stsc242024g00001 332 SMART efh_1 224 252 IPR002048 GO:0005509
Stsc242024g00001 332 SMART efh_1 188 216 IPR002048 GO:0005509
Stsc242024g00001 332 SUPERFAMILY Protein kinase-like (PK-like) 1 162 IPR011009 -
Stsc242024g00001 332 Coils Coil 206 226 - -
Stsc242024g00001 332 ProSiteProfiles Protein kinase domain profile. 1 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242024g00001 332 SMART serkin_6 1 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242024g00001 332 Pfam Protein kinase domain 1 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242024g00001 Stsc-Chr242024 8587 11445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242024g00001 1 327 EF-hand Containing Proteins AT3G20410 86.544 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc242024g00001 Pkinase 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242024g00001 K13412 - gmx:100794852 610.142