Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242021g00006 ATGGAAGTGGATAATAATCATAGTAGTAGTATGAAGACGAAGAAGAAGAAGAATGGATCAATAAGTTCGATTTTCAAGCACGCAGATACGATAGACTGGTTCTTAATGTTGTTTGGTTTGATGGGAGCAATTGGAGATGGATTAACCACACCTTTGGTCTTGCTTATCACTAGCAAGATGATGAACAACCTTGGAGAATTTAATCTTTCACAAGCTGGTTTCACTCATAACATAAACAAGAATGCAGTGGCTTTGTTATATTTGGCATGTGGGTCTTTTGTTGCTTGCTTCCTGGAGGGTTATTGTTGGACAAGAACAGGGGAAAGACAAGCAACAAGAATGAGAGGGAGATATTTAAAGGCAGTTTTAAGACAAGAAGTTGCATACTTTGATTTGCATGTTACTAGCACTTCTGAGGTCATCACCAGTGTCTCCAATGATAGCCTTGTAATTCAAGATTGTTTAAGTGAAAAGGTTCCAAATTTCTTGATGAATGCATCAATGTTTATTGGGAGCTACATAGTGGCATTTGCATTACTATGGAGACTAGCAATAGTGGGGTTCCCATTTGTGGTGTTGTTAGTGATCCCAGGCTTAATGTATGGAAGAACATTAATGGGGTTAGCAAGAAAAATAAGAGAAGAGTATAACCAAGCAGGGACAGTGGCAGAGCAAGCAATATCATCAATAAGAACAGTGTATTCTTTTGTGGGAGAGAACAAGACCATAGTTGCTTTCTCTGATGCTCTACAAGGTTCAGTTAGGTTTGGATTGAAACAGGGTTTGGCCAAAGGCTTAGCCATTGGAAGCAATGGTATTGTGTTTGCAATTTGGTCTTTTATGTCTTATTATGGTAGCAGGATGGTTATGTATCATGGTGCTCAAGGTGGCACTGTTTTTGCTGTTGGTGCTTCTATTGCTCTTGGCGGATTGTCCTTAGGTTCTGGTCTATCCAATCTTAAGTATTTTTCAGAAGCAAGTACTGCCGGTGAACGAATCATGGAGGTTATAAAACGAATTCCAAAGATTGATTCGGATAATATGGCCGGAGAAATTCTAGAAAATGTTTCCGGGAAAGTCGAATTCGACCATGTCGATTTCGCCTATCCCTCGAGACCGGACAACATGATACTGACTGACTTCTCCGTCAAGATACCTGCTGGGCGGACTGTAGCTCTAGTCGGAGGGTCCGGATCGGGAAAATCGACGGTGATATCGCTCTTGCAAAGGTTCTATGACCCACTTGGGGGTGAGATTAGGCTTGATGGGGTGCCAATTAAGAAGTTGCAATTAAAATGGCTAAGGTCTCAAATGGGTTTGGTTAGCCAAGAGCCAGCACTATTTGCAACAAGCATAAAAGAGAATATTCTGTTTGGGAGAGAAGATGCAACAGAGGAAGAGGTTGTAGAAGCTGCAAAAGCCTCCAATGCTCATAATTTCATATCACAGTTGCCACAAGGATATGATACCCAGGTTGGGGAGAGAGGAGTTCAAATGTCCGGTGGCCAAAAACAAAGAATCGCCATCGCAAGAGCAATCATCAAGAAACCAAGAATCCTCCTTCTAGACGAAGCAACAAGCGCACTCGACTCCGAATCGGAGCGCGTCGTCCAAGAAGCTCTCGACAAAGCCTCCGTCGGCCGCACCACCATCATCATCGCCCACCGCCTCTCCACCATTCAAAACGCCGACCTAATTGCCGTCGTTCAAAACGGCAAGGTCATGGAAATAGGGCCTCACCAAACCCTAATTCAAAACGACACCGGTCTTTACGCTTCTCTCGTTCGCCTCCAACAAACCGAGAAAGGATCGAAGAATAATAATAACGAACAAGACGACGTCGTTTTGTCGCCTCGTCCGTCTTCGATTTCGAATAGAGATTTGCAGAATACAAGCAGTAGAAGGCTCTCGATTGTTAGCAGGTCCAGCTCAGCAAATTCGGTTGCGCGCGTGGGTTCATGCGCGGGTGATGAGCATGACTTAGAGGAGAAGATGATTGAAGATAACGACTTGGCTGTTCCTTCGTTTCGCAGGTTGTTGGCTCTAAACCTTCCGGAGTGGAAGCAAGCATGTATGGGATGTTTGGGTGCAGTGCTATTTGGTGCAGTTCAACCGATATATGCATTCTCAATGGGGTCAATGATATCAGTTTATTTTCTGACAGACCATGATGAGATTAAGAGGAAGACTATGATCTACGCACTTTGTTTTCTAGGGTTGGCTGTGTTTTCTCTAATTGTGAATGTGTTGCAGCATTATAACTTTGGTTACATGGGTGAGTACTTGACCAAGAGGGTTAGAGAGAGGATGCTTTCAAAGATTCTCACTTTTGAAGTTGGATGGTTTGATCAGGATGAGAATTCTACTGGTGCTGTTTGTTCTAGACTTGCCAAAGATGCCAATGTGGTAAGGTCTTTAGTGGGAGATAGAATGGCCCTAGTGGTGCAAACGATCTCAGCAGTTTTAATAGCATGCACCATGGGCTTGATCATAGCATGGAGACTCGCCCTTGTTATGATAGCCATTCAACCAATCATCATAGTACGTTTCTACGCAAGGCGTGTTCTTTTAAAAAACATGTCAAGCAAGGCCATCAAGGCCCAAAGTGAAAGCAGTAAGATAGCAGCCGAAGCCGTCTCCAATCTAAGAACGATAACTGCATTCTCTTCCCAAGATAGAATACTCAAAATGCTCGAGAAAGCCCAACAAGATCCAAGACGCGAGACCATCCGACAATCTTGGTATGCTGGGATTGGACTTGCTTGCTCCCAAAGCCTCACGTGTTGCACATGGGCCTTGGATTTCTGGTACGGTGGGAAACTTATTTCCCACGCATACATAACATCTAAGGCGCTATTTGAGACCTTCATGATCTTGGTGAGCACAGGTAGGGTCATTGCTGATGCTGGAAGCATGACTAGTGACCTTGCAAAAGGATCAGATGCTGTGGCCTCAGTTTTTGCCATCCTAGACAGGTATACTAAGATTGAGCCTGATGATCCAGAAGGGTACAAGCCCAAAAGATTAACGGGCCAGATAGAACTAAAAGGTGTGCATTTCGCATACCCAGCAAGGCCCAACATGATGATCTTCGAAGGGTTCTCAATGAAAATTGATGCAGGCAAATCAACAGCACTAGTGGGGCAAAGTGGTTCAGGGAAATCAACAATAATAGGGTTAATTGAGAGGTTCTATGACCCAATTAAAGGACAAGTGACCATAGATGGTAGAGACATTAAATCATATAACCTAAGGTCACTAAGGAAGCACATTGCATTAGTGAGCCAAGAGCCAACCCTATTTGGTGGCACCATTAAGGAGAACATTGCTTATGGAGCTTGTGAAGAAGATGATGATAATCAGAAAAGAGTTATCAGTGAAAGTGAGATCATAGAAGCAGCAAGGGTAGCAAATGCACATGAATTTATTGCAAGTTTGAAAGATGGGTATGAGACATATTGTGGTGATAGAGGGGTTCAATTGTCAGGGGGTCAAAAGCAAAGGATTGCAATTGCAAGGGCCATATTGAAAAATCCAGAAGTTTTGCTATTGGATGAGGCAACAAGTGCACTTGATAGCCAATCAGAGAAGCTTGTTCAAGGTGCATTGGAGAGTGTTATGGTTGGAAGAACAAGTGTTGTTGTTGCTCATAGGTTAAGCACTATTCAGAATTGTGATGTTATTGCTGTTTTGGATAAAGGGAAGCTTGTGGAGAAAGGTACCCATTCTTCTTTGTTGGGTAAAGGCCCAACTGGTGCTTATTACTCTCTTGTTAGTTTGCAACAAAGAAGACCAACCAATTCCACTAATAATGGTGGTGAAATTAGCTAG 3831 0.4323 MEVDNNHSSSMKTKKKKNGSISSIFKHADTIDWFLMLFGLMGAIGDGLTTPLVLLITSKMMNNLGEFNLSQAGFTHNINKNAVALLYLACGSFVACFLEGYCWTRTGERQATRMRGRYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDCLSEKVPNFLMNASMFIGSYIVAFALLWRLAIVGFPFVVLLVIPGLMYGRTLMGLARKIREEYNQAGTVAEQAISSIRTVYSFVGENKTIVAFSDALQGSVRFGLKQGLAKGLAIGSNGIVFAIWSFMSYYGSRMVMYHGAQGGTVFAVGASIALGGLSLGSGLSNLKYFSEASTAGERIMEVIKRIPKIDSDNMAGEILENVSGKVEFDHVDFAYPSRPDNMILTDFSVKIPAGRTVALVGGSGSGKSTVISLLQRFYDPLGGEIRLDGVPIKKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATEEEVVEAAKASNAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKASVGRTTIIIAHRLSTIQNADLIAVVQNGKVMEIGPHQTLIQNDTGLYASLVRLQQTEKGSKNNNNEQDDVVLSPRPSSISNRDLQNTSSRRLSIVSRSSSANSVARVGSCAGDEHDLEEKMIEDNDLAVPSFRRLLALNLPEWKQACMGCLGAVLFGAVQPIYAFSMGSMISVYFLTDHDEIKRKTMIYALCFLGLAVFSLIVNVLQHYNFGYMGEYLTKRVRERMLSKILTFEVGWFDQDENSTGAVCSRLAKDANVVRSLVGDRMALVVQTISAVLIACTMGLIIAWRLALVMIAIQPIIIVRFYARRVLLKNMSSKAIKAQSESSKIAAEAVSNLRTITAFSSQDRILKMLEKAQQDPRRETIRQSWYAGIGLACSQSLTCCTWALDFWYGGKLISHAYITSKALFETFMILVSTGRVIADAGSMTSDLAKGSDAVASVFAILDRYTKIEPDDPEGYKPKRLTGQIELKGVHFAYPARPNMMIFEGFSMKIDAGKSTALVGQSGSGKSTIIGLIERFYDPIKGQVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIKENIAYGACEEDDDNQKRVISESEIIEAARVANAHEFIASLKDGYETYCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQGALESVMVGRTSVVVAHRLSTIQNCDVIAVLDKGKLVEKGTHSSLLGKGPTGAYYSLVSLQQRRPTNSTNNGGEIS 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242021g00006 1276 CDD ABC_MTABC3_MDL1_MDL2 1013 1261 - -
Stsc242021g00006 1276 CDD ABC_6TM_Pgp_ABCB1_D2_like 680 996 - -
Stsc242021g00006 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Stsc242021g00006 1276 Gene3D - 1003 1271 IPR027417 -
Stsc242021g00006 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 693 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242021g00006 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 598 IPR027417 -
Stsc242021g00006 1276 PANTHER ABC TRANSPORTER B FAMILY 5 748 IPR039421 -
Stsc242021g00006 1276 FunFam ABC transporter B family member 4 1003 1268 - -
Stsc242021g00006 1276 MobiDBLite consensus disorder prediction 600 635 - -
Stsc242021g00006 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1261 IPR027417 -
Stsc242021g00006 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242021g00006 1276 SMART AAA_5 1040 1241 IPR003593 GO:0016887
Stsc242021g00006 1276 SMART AAA_5 387 579 IPR003593 GO:0016887
Stsc242021g00006 1276 Pfam ABC transporter transmembrane region 37 302 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242021g00006 1276 Pfam ABC transporter transmembrane region 691 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242021g00006 1276 Gene3D - 358 622 IPR027417 -
Stsc242021g00006 1276 FunFam ABC transporter B family member 1 23 359 - -
Stsc242021g00006 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1013 1258 IPR003439 GO:0005524
Stsc242021g00006 1276 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524|GO:0016887
Stsc242021g00006 1276 FunFam ABC transporter B family member 4 350 607 - -
Stsc242021g00006 1276 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Stsc242021g00006 1276 Pfam ABC transporter 1033 1189 IPR003439 GO:0005524
Stsc242021g00006 1276 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 333 - -
Stsc242021g00006 1276 SUPERFAMILY ABC transporter transmembrane region 674 998 IPR036640 GO:0005524|GO:0016020
Stsc242021g00006 1276 SUPERFAMILY ABC transporter transmembrane region 24 344 IPR036640 GO:0005524|GO:0016020
Stsc242021g00006 1276 FunFam Putative ABC transporter B family member 8 656 1001 - -
Stsc242021g00006 1276 Gene3D ABC transporter type 1, transmembrane domain 84 987 IPR036640 GO:0005524|GO:0016020
Stsc242021g00006 1276 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Stsc242021g00006 1276 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242021g00006 Stsc-Chr242021 33684 44200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242021g00006 692 1272 Calmodulin-binding Proteins AT2G36910 37.393 2.16e-113 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242021g00006 K05658 - gmx:100807709 1977.99