Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242021g00002 ATGAGGTTGCAAGGAAACGGTGGAAGCAGCGGTGAGAAGACGGTCTCAGGCCTCACACCGTCAGATCTGATTTCGCTTTCTTTCACACTCTGTTCAGATTCGAAAGGAAGAAAGAAAGAAGAACTATGTCTTCTTTATGCCTCCGATATGAAAGAACCTGCGGCGACTACGAAGCTGGGGAAACAAGATCAAAGAAGGAGAGTGCTGGAAACTTGCGTCGGAGATGGAAAATGGAGTGAGCGTGTGGACGATGTTGGTGAGATGAAGAGGGCAAGGGATGATGTTTACTCTGGCTCTCAATTCAAACGTCCCTTTAGTTCCTCACGTGTTGATTCCTATGGCCAAACTCAAGGGCCTGGAGGAGGAGGAGGAAGTGGAGGAGGTGGCGGTGGAGGAGCAACCACTTCTCAGAAACTGACAACCAATGATGCCTTAACATATTTGAAAGAAGTGAAAGACATGTTTCAGGATCAAAGAGAAAAATATGACTTGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACTTTCTTGCCTAAGGGATATGAGATAACACTTGATGAGGAAGAAGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCAATTAGTTTTGTTAACAAGATAAAGAAACGCTTCCTAAATGACGAGCATGTTTACAAATCATTCTTGGATATTTTGAATATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGGACCATAGAGATTTGCTAGATGAGTTCACTAGATTCTTACCAGATACTTCTCAAGCACCTTCTGCACAACATGCTCCATACGGTCGAAATTCATTGCAGCGATTCAATGAGCGGAGTTCAACAGCACCCATGATGCGTCAAGTGCATGTAGACAAGGCACAGCGCTATCGACGAGACAGGATTCTTTCCTCTCATGATCGTGATCAGAGTGTTGATCGAGCTGATCTGGATGATGACAAATTGAACATGCACAAGGAGCAGAGGAAACGTGAGAGTCGGGATAGAAGAGTCCGTGATCATGAGGAGAGGGAACCGGATCTTGATAATGGCCGGGATTTGAACTTACAACGCTTTCAAGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGGTTTGCGATGGCTTCTGACTTTCCTTCTTATGATGACAAAGATGCCTTAAAGAACATGTATGGTCAAGCATTCAGCTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGACTACCAAGCATTCTTGAAGTGCCTTCATATTTTCAGCAATGGGATAATAAAAAGGAATGATTTACAAAATTTGGTAACGGATTTACTTGGAAAACACTCTGATCTAATGGATGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCTCTGTCTACTGATGGTCATATACCAAGATCCTCAAAGTTGGAGGACAAGGATAAAGAGCACAAGCGTGAGATGGATGGGCCTAAAGAGAAAGAAAGATACAGCAAATACTCAGGAAAATCCATTCAAGAACTCGATCTTAGTGACTGCAAACGTTGTACTCCAAGCTACAGGCTGCTGCCCGCAGATTATCCAATTCCTGTGGCTACTCAGAAATCTGAACTCGGAGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCAGGAAGCGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTCAGATGCGAAGATGACAGCATAAATGAAAATAAGATGGAGGGCAAAGTTGAAGAACAATTTACTGCTCTAAATTTACGGTGCATTGAACGTCTGTATGGTGACCATGGTCTCGATGTGATAGACATTTTGCGTAAAAATCCAACTCATGCTCTACCGGTAATATTGACTCGACTTAAGCAGAAACAAGAGGAGTGGAGTAAGTGCCGAGCAGATTTCAATAAAGTTTGGGCAGAAATTTATGCTAAGAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGCACTCGAAATGTTTCGTGACTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGATATTCTTCAGTCCATTGCTGCTGGAAGTAAACAGCCTTTAACTCCACATCTGGAGTTTGAATATCCTGATGCTGGGATTCATGAAGACCTGTATAAACTTATTCGGTATTCATGTGAGGAGATTTACTCTAGTAGGGAGTTGATGAATAAAACTATGAGGCTCTGGTGTACCTTTTTGGAACCGATGCTTGGTGTTCCTTCCCGATCACATGGGACAGAGAAGGTGGAAGACAGGAAAGCAGGGCCTAATGTTGGCAATTCAAATGCGGGCAATGGAAGTCCTCATGGAGATTCCATTTCAATAAATTCAAGGTTACCAAAATCTGATAAGAATGAAGCGGATGGTAGAGTACCTGATGTAAAGAATGTTCACCGGACTAGTGCTGCAGCTAATGATAAAGACAATGGATCGGTTGGTGGTGAAAATGTCTGTAGAGATGAACCACAACTGGATAAAGGGCAGACAAATATCGAGTCCACTGATAAAGTCTCTGGGATTAATAAGCAATCTTCTGCTGATGAACAAGGAGCTAAAATCAATGCATCAGTTTCAGTTAGAGAAGAAAAATCAGAAGATAATCCGAGCAGGAACAATGTAGAATCGGCTCCAGGCACTATCACTACACCTCAACCTACGGATGCCAACGAATCTGCACCTAAGTCTAAGGAAGTCAATGCTACTGTGGTAGAGGGGTCTGGTGTTACAGCTCCTGTTACAGCGGCTGATGGGGTACCACCTGAGAGCAGTAAAGTTAGAAGCCATGAAGAATCTGCTGAGCCTTGTAAATTTGAAAAGGAAGAGGGTGAGTTATCACCTAATGGTGATTCGGAGGAGGATAACTTCGTTGCTTATGGAGATTCAAATGTGCAGTCAGTGTCTAAGTCAAAGCACAATATTGAGAGAAGTAAATATCAGTCCAGAAATGGAGAGGATGAGTCCTGCCCAGAGGCTGGAGCCGGGGATGCAGATGCAGATGCAGATGATGAGGACAGTGAAAATGCGTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGGGAAGACCATGAGGATGAGGAAGATATGGAGCATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGTACATGTGATGCACAATCGGCTGGAGGAGATGGTTCATCTCAACCACATTCGGAAAGGTTTCTTTCGTCTGTGAAACCTCTGACAAAGCATGTATCAGCAGTGTCATATGTTGAAGACATGAAGGATTCAAGGGTCTTTTACGGAAACGATGATTTCTATACACTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAACCAATGCCATGAGTTCAGAAATGAAATGGAAAGCCAAGGATGCCAGCACCCCAGATCCTTATTCGAAATTTATGGATGCATTGTACAGCCTGCTTGATGGATCTTCTGAGAATGCAAAGTTTGAAGATGAATGCCGAGCACTTATTGGGAACCAGTCATATGTGTTATTCACATTGGACAAATTGATATACAAACTGGTTAGACATCTTCAAAATGTTGCAACAGATGATATGGCCAATAAGCTTCTCCAATTGTACGAGTACGAAAAGTCCCGGAAACCTGGGAAACTAAACGATTCAGTATATCATGCAAATGCACATGTCATCCTTAACGAGGACAATATATATAGATTGCAATGTTCCTCAACACCCTCTCGGTTATCCATCCAGCTTATGGACAACATGAATGAAAAGCCTGAGATGTTTGCTGTTTCTATTGATCCAAATTTTTCTTTCTATCTTCACAATGAATTTCTCTCTGTCCTTCCTGCTAAAAAGGAACCGCATGGCATTTTACTTCAAAGAAACAAACGGAAGTATGGGGACTCTGATGAGCTCTCTGGAATAACCTCCGCCATGGAAGGTGTCAAACTAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCGTCCAAGATCTCCTATGTTCTCGACACACAAGATTTCTTTTTCCGGCCGAAAAGGAGAAGGCTAGTGTCACCGGAAACCAAATCCTGTCGGCACCGTAGGGACAGACAGGAAAGATACCGCAGGTTGATGGCGACCGCTGCGCAATGA 4335 0.4251 MRLQGNGGSSGEKTVSGLTPSDLISLSFTLCSDSKGRKKEELCLLYASDMKEPAATTKLGKQDQRRRVLETCVGDGKWSERVDDVGEMKRARDDVYSGSQFKRPFSSSRVDSYGQTQGPGGGGGSGGGGGGGATTSQKLTTNDALTYLKEVKDMFQDQREKYDLFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEEEAPPKKTVEFEEAISFVNKIKKRFLNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLDEFTRFLPDTSQAPSAQHAPYGRNSLQRFNERSSTAPMMRQVHVDKAQRYRRDRILSSHDRDQSVDRADLDDDKLNMHKEQRKRESRDRRVRDHEEREPDLDNGRDLNLQRFQDKKKSVKKAEGFAMASDFPSYDDKDALKNMYGQAFSFCEKVKEKLSSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDGHIPRSSKLEDKDKEHKREMDGPKEKERYSKYSGKSIQELDLSDCKRCTPSYRLLPADYPIPVATQKSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDSINENKMEGKVEEQFTALNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSKCRADFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLHSKCFVTEIKEIKEKQQKEDDILQSIAAGSKQPLTPHLEFEYPDAGIHEDLYKLIRYSCEEIYSSRELMNKTMRLWCTFLEPMLGVPSRSHGTEKVEDRKAGPNVGNSNAGNGSPHGDSISINSRLPKSDKNEADGRVPDVKNVHRTSAAANDKDNGSVGGENVCRDEPQLDKGQTNIESTDKVSGINKQSSADEQGAKINASVSVREEKSEDNPSRNNVESAPGTITTPQPTDANESAPKSKEVNATVVEGSGVTAPVTAADGVPPESSKVRSHEESAEPCKFEKEEGELSPNGDSEEDNFVAYGDSNVQSVSKSKHNIERSKYQSRNGEDESCPEAGAGDADADADDEDSENASEAGEDVSGSESAGDECFREDHEDEEDMEHDDVDGKAESEGEAEGTCDAQSAGGDGSSQPHSERFLSSVKPLTKHVSAVSYVEDMKDSRVFYGNDDFYTLFRLHQILYERILSAKTNAMSSEMKWKAKDASTPDPYSKFMDALYSLLDGSSENAKFEDECRALIGNQSYVLFTLDKLIYKLVRHLQNVATDDMANKLLQLYEYEKSRKPGKLNDSVYHANAHVILNEDNIYRLQCSSTPSRLSIQLMDNMNEKPEMFAVSIDPNFSFYLHNEFLSVLPAKKEPHGILLQRNKRKYGDSDELSGITSAMEGVKLINGLECKIACSSSKISYVLDTQDFFFRPKRRRLVSPETKSCRHRRDRQERYRRLMATAAQ 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 95 137 - -
Stsc242021g00002 1444 FunFam Paired amphipathic helix SIN3-like protein 220 291 - -
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 1089 1104 - -
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 325 394 - -
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 804 1139 - -
Stsc242021g00002 1444 ProSiteProfiles PAH domain profile. 221 291 IPR003822 GO:0006355
Stsc242021g00002 1444 Gene3D Paired amphipathic helix 220 292 IPR036600 GO:0006355
Stsc242021g00002 1444 Gene3D Paired amphipathic helix 418 492 IPR036600 GO:0006355
Stsc242021g00002 1444 SMART hdac_interact2seq4b 553 630 IPR013194 -
Stsc242021g00002 1444 Pfam C-terminal domain of Sin3a protein 1162 1409 IPR031693 -
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 844 858 - -
Stsc242021g00002 1444 Pfam Sin3 family co-repressor 555 620 IPR013194 -
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 821 843 - -
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 311 394 - -
Stsc242021g00002 1444 PANTHER SIN3B-RELATED 136 1303 IPR039774 GO:0003714
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 1053 1073 - -
Stsc242021g00002 1444 ProSiteProfiles PAH domain profile. 421 490 IPR003822 GO:0006355
Stsc242021g00002 1444 Pfam Paired amphipathic helix repeat 160 204 IPR003822 GO:0006355
Stsc242021g00002 1444 Pfam Paired amphipathic helix repeat 443 487 IPR003822 GO:0006355
Stsc242021g00002 1444 Pfam Paired amphipathic helix repeat 244 288 IPR003822 GO:0006355
Stsc242021g00002 1444 SUPERFAMILY PAH2 domain 135 206 IPR036600 GO:0006355
Stsc242021g00002 1444 FunFam Paired amphipathic helix protein SIN3 418 492 - -
Stsc242021g00002 1444 ProSiteProfiles PAH domain profile. 137 207 IPR003822 GO:0006355
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 506 539 - -
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 933 959 - -
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 1122 1137 - -
Stsc242021g00002 1444 FunFam Paired amphipathic helix protein Sin3 143 205 - -
Stsc242021g00002 1444 SUPERFAMILY PAH2 domain 218 290 IPR036600 GO:0006355
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 1033 1047 - -
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 890 915 - -
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 985 1007 - -
Stsc242021g00002 1444 Gene3D Paired amphipathic helix 143 205 IPR036600 GO:0006355
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 513 539 - -
Stsc242021g00002 1444 SUPERFAMILY PAH2 domain 425 490 IPR036600 GO:0006355
Stsc242021g00002 1444 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242021g00002 Stsc-Chr242021 9095 23162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242021g00002 126 236 WRKY Transcription Factor Family AT4G12020 51.351 1.93e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc242021g00002 Sin3a_C 1.4e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242021g00002 K11644 - gmx:100807181 2108.18