Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242017g00001 ATGGAGTTTGTGATGCCAACAAGCTCCAAAAACTTCACGCCTTTCTCCATCATTCTGTTATTCCTTGCCTTCAATTGCTTCCAACACTTTGGATCCTTCGCTCAACTCATACCACAAGATGAAGTGAAAGTGCTACAAACAATATCAGACAAAGTGAAGAACCTGGATTGGAAAGTAACACAAAGTTCTTGCAACGTTGATGGAGGATTTGGTAAACAAGTAGTCAATTCAGGGCCTCAAGCCTTTAAGAATATCACATGCAATTGCTCTTTCAATAGTAACACTATTTGCCATGTCACAAACATTGAGCTCAAGGGTCTCAACATTTCTGGAGCTATACCTGATGAATTTGGAAATCTAACTCATCTGGTGGAACTTGATCTGACTCGCAATTATTTCAATGGTTCAATTCCAAAGAGTCTTGCAAGCCTCCCACTTACTAATCTGTCACTCTTGGGAAATAATCTTACTGGTCCAATTCCCCCTGAAATTGGTAACGTTGCTACTTTGCTTGAACTGAACTTAGAAGATAATCAACTTGGAGGATCCCTTCCACCTAGCCTTGGAAATTTGAGCAAATTGGATCAATTACTTCTCTCTGGAAATAATTTTACAGGGACAATCCCAGAAGAATTTGGCAAACTAAAGAATCTCACTGGGTTTAGGATAGATGGGAACAGTTTTTCTGGGAAGATACCAAACTTCATTGGGAACTGGACCAAAATTATTAGATTGGATATGCAGGGAACATCAATGAAAGGCCCAATTCCTTCTGCTATATCTGGTTTGACAACTTTGCAAGAGTTGAGAATAACTGATTTGAATGGACCACCTATGACATTTCCAAATCTTACAGAGTTGACGAGCTTGACCAGACTGGAATTAAGAAATTGCCCTCTCACTGGTCCCATTCCACCCTATCTTGGTGAATTGCAACGTTTAAAAACTCTTGACCTGAGCTTCAACAGGTTGAATGGTTCTATCCCAGATTCACTTGGGAACTTGAAAGGACTAAATTACCTGTTCCTGAATAACAATTCTTTGACTGGAACAATTCCTTCATGGATACTAGACAGCAGCCAGGACATGGATTTATCTTACAATGATTTTACATCACCTTCTCAACCTACTTGCCAACTTCAGGATGTGAACCTAGCTTCTAGCTTCTCTTCCTCAACAAGCACTCAAACTTCATGCTTAAAGAGGGGCCTACCATGTTCTGGAAAAACAAACACTTATTCAATTTTCATAAACTGTGGAGGATCTGACATTGAGTCCGAGGGAAACAAATATGAAGCCGACGTAACCAGAAGCGGCACTTCAAACTTTCATACTAGTACTAGCAACAAGTGGGCTTTCAGCAGCACAGGAGCATATCTAGGAGATACAAGTGCTCCACATGTGGCAACAAATGATTTCAATTTGAATATTAGTGGACCTGAATACTATCAAACGGCTCGTGTTGCCCCTAACTCTCTAAATTACTATGGCCTCTGTATGATGAATGGAAACTATAAAGTGAAGCTTCATTTTGCTGAGATCATGTTTTCTAATGATCAGACATTTAGCAGCCTCGGAAGGCGAATATTTGATGTTTCAGTCCAAGGTGTTAAATATTTGAAAGATTTTAACATTGCGGAAAAGGCTGGTGGAGTAGGTAAACCATATACTGTGGAGTTGAATGTAGATGTTAATGATAATACCTTGGAGATTCATTTGTCCTGGGCAGGGAAAGGAACTAATGCCATTCCTGCAAGAGGTGTATATGGACCTCTTATATCTGCCATAACTGTTACCCCAAACTTCAAAATTCCTTCCAATGGACTGTCTACTGGAGCAATCGTTGGAATTGTGATCGGATCGTGTGCATTTGTCATACTGGTACTCTTGGTGCTTTGGAAGATGGGTTTCCTTTGTGGGAAAGATCAAACAGATAAAGAACTTCTAGAACTGAAAACAGGCTATTTCAGTTTAAGGCAAATTAAAGCTGCTACTAATAACTTTGACCCAGCAAACAAAATAGGTGAAGGAGGCTTTGGGCCAGTATATAAGGGTGTACAGCCAGATGGTACTGTAATTGCAGTTAAGCAACTCTCATCCAAATCAAAGCAAGGGAACCGCGAATTCGTTAATGAAATAGGCATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAGCTTTATGGTTGCTGCATTGAAGGGCACCAATTGCTGCTGGTATATGAATACATGGAGAACAATAGTCTTGCTCGTGCACTTTTCGGAAAAGTAGAACAGAGGATGCATTTGGACTGGCCCACAAGAATGAAAATCTGTGTGGGTATAGCAAGGGGATTAGCTTATCTACACGAGGAATCAGTATTGAAAATAGTTCATAGGGATATTAAGGCAACAAATGTCTTACTTGATAAGTATCTGAATGCTAAAATCTCTGATTTTGGCTTAGCCAAGCTTGATGAAGAGGAGAATACCCATATTAGCACAAGAATAGCTGGAACAATTGGTTACATGGCTCCTGAGTATGCTATGCGAGGTTACTTAACTGACAAGGCAGATGTCTATAGCTTCGGCATTGTGGCTTTAGAGATTGTTAGTGGGAAGAGCAACACAAATTACAGGCCAAAAGAGGAGTTTGTTTATCTTCTGGATTGGGCCTATGTTCTCCAAGAACAAGGAAACCTTCTAGAGTTGGTCGATCCGAGTCTCGGTTCAAGCTACTCCCCTGAAGAAGCCATGAGAATGCTGCAGTTGGCACTCTTGTGCACCAATCCATCTCCTACTCTTAGACCACCCATGTCATCTATTATAAGTATGCTTGAAGGGAAGACTCCGATCCAAGCACCAATAATCAAGCGCAGCGAGGGAGCACAAGACCCAAGATTCAAGGCCTTTGAGATGCTGTCGCACGATAGCCAAACAAATATCTCTTCTGCTGCATTCTCGCAACATAGCCTAGAGCAGAGGAGCAGGTCCATGAATGGACCATGGGTTGATTCCTCTATCTCTCTTACAAGCGGAGAAGATTATTCCTCAACCAATAATCTTATAAACAGTTCACGCAATGTGTGA 3069 0.4099 MEFVMPTSSKNFTPFSIILLFLAFNCFQHFGSFAQLIPQDEVKVLQTISDKVKNLDWKVTQSSCNVDGGFGKQVVNSGPQAFKNITCNCSFNSNTICHVTNIELKGLNISGAIPDEFGNLTHLVELDLTRNYFNGSIPKSLASLPLTNLSLLGNNLTGPIPPEIGNVATLLELNLEDNQLGGSLPPSLGNLSKLDQLLLSGNNFTGTIPEEFGKLKNLTGFRIDGNSFSGKIPNFIGNWTKIIRLDMQGTSMKGPIPSAISGLTTLQELRITDLNGPPMTFPNLTELTSLTRLELRNCPLTGPIPPYLGELQRLKTLDLSFNRLNGSIPDSLGNLKGLNYLFLNNNSLTGTIPSWILDSSQDMDLSYNDFTSPSQPTCQLQDVNLASSFSSSTSTQTSCLKRGLPCSGKTNTYSIFINCGGSDIESEGNKYEADVTRSGTSNFHTSTSNKWAFSSTGAYLGDTSAPHVATNDFNLNISGPEYYQTARVAPNSLNYYGLCMMNGNYKVKLHFAEIMFSNDQTFSSLGRRIFDVSVQGVKYLKDFNIAEKAGGVGKPYTVELNVDVNDNTLEIHLSWAGKGTNAIPARGVYGPLISAITVTPNFKIPSNGLSTGAIVGIVIGSCAFVILVLLVLWKMGFLCGKDQTDKELLELKTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGVQPDGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGHQLLLVYEYMENNSLARALFGKVEQRMHLDWPTRMKICVGIARGLAYLHEESVLKIVHRDIKATNVLLDKYLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSSYSPEEAMRMLQLALLCTNPSPTLRPPMSSIISMLEGKTPIQAPIIKRSEGAQDPRFKAFEMLSHDSQTNISSAAFSQHSLEQRSRSMNGPWVDSSISLTSGEDYSSTNNLINSSRNV 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242017g00001 1022 ProSiteProfiles Leucine-rich repeat profile. 313 336 IPR001611 GO:0005515
Stsc242017g00001 1022 SUPERFAMILY Protein kinase-like (PK-like) 653 946 IPR011009 -
Stsc242017g00001 1022 Gene3D Transferase(Phosphotransferase) domain 1 744 949 - -
Stsc242017g00001 1022 SUPERFAMILY L domain-like 89 375 - -
Stsc242017g00001 1022 Pfam Leucine Rich Repeat 289 310 IPR001611 GO:0005515
Stsc242017g00001 1022 Pfam Leucine Rich Repeat 313 335 IPR001611 GO:0005515
Stsc242017g00001 1022 Gene3D - 409 601 - -
Stsc242017g00001 1022 Pfam Malectin domain 415 596 IPR021720 -
Stsc242017g00001 1022 Gene3D Ribonuclease Inhibitor 173 276 IPR032675 -
Stsc242017g00001 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 26 971 - -
Stsc242017g00001 1022 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 412 601 - -
Stsc242017g00001 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase 744 951 - -
Stsc242017g00001 1022 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 38 275 - -
Stsc242017g00001 1022 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 281 373 - -
Stsc242017g00001 1022 CDD STKc_IRAK 674 941 - -
Stsc242017g00001 1022 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 639 743 - -
Stsc242017g00001 1022 Gene3D Ribonuclease Inhibitor 43 172 IPR032675 -
Stsc242017g00001 1022 Gene3D Ribonuclease Inhibitor 277 402 IPR032675 -
Stsc242017g00001 1022 SMART serkin_6 668 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242017g00001 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Stsc242017g00001 1022 Gene3D Phosphorylase Kinase; domain 1 637 743 - -
Stsc242017g00001 1022 Pfam Protein tyrosine and serine/threonine kinase 672 938 IPR001245 GO:0004672|GO:0006468
Stsc242017g00001 1022 ProSiteProfiles Protein kinase domain profile. 668 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242017g00001 Stsc-Chr242017 5868 14960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242017g00001 19 1002 Receptor kinase-like Gene Family AT1G53440 62.349 0.0 1264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc242017g00001 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242017g00001 - - adu:107459475 1788.47