Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242016g00002 ATGAAGTTCTGCAAAACATATCAAAATTACATGCAAGGGCAGGAGGAGAAGCTACCTGGGCTTGAATTCAAAAAGCTGAAAAAGATTATGAAGAAATGTAGAAGTGGAGGTTGTTATTCTCCTATCATGCTCATCAACCATAATAATAATAATAATCCCACCAAAAAATGTCCTATTCAATGCCCAGTTTGTGATGGTACTTTCTTCCCTTGCCTTCTGAATGAATTATTGGAAGTAGTTGGTTGCTTCAACCAGAGAGCACAGCATTTGCTAGAATTACACCTTTCTTCAAATTCTGGGTTCAAGAAATACCTTCTTTGCTTGAGTAGATCCCATCATAATTCTATCACTCAAGAAGGCAAAGATCTTGTCATTTATGCACTCATAAATGCAGTCGCTACCAGAAAAATATTAAAGAAATATGATAAGATACATGATTCAAAGCAAGGGCAATTATTCAAGTCACAAGTGCAGGCTATGCACAAGGAAATTCTTCAAAGTCCATGGCTTATTGAGCTTATGGCCTTGTACATCAACAATGGAGACCCTAAATCTTCTTTGTTTGATGGATGCTGCCTCACTTTTAAGGATGGAAAACCATCACTTACTTGCCAGCTCTTTAATTCCTACAAAGTTGATATTGACTTGACTTGTTCTATATGCTTGGATACAGTGTTTGATCCTGTAGCGTTGACTTGTGGCCATGTTTTCTGTTACACATGTTCTTGTTCGGCTGCATCAGTAACCATTGTTGATGGACTAAAGGCAGCCGATCCTAAAGAAAAGTGTCCTCTATGCCGCGAGAAAGGAGTTCATGAAGGTGCTGTGCACTTGGAAGAACTAAATATTCTGTTAGGCCAAAGATGCAAGGAGTATTGGAAGGAAAGACTTGGGATGGAGAGGGTAGAGAGGGTTAGGCAGGCCAAGGAGCACTGGGAATCAGTGTGTAGAGCAGCCATGGGAATCTAA 969 0.3983 MKFCKTYQNYMQGQEEKLPGLEFKKLKKIMKKCRSGGCYSPIMLINHNNNNNPTKKCPIQCPVCDGTFFPCLLNELLEVVGCFNQRAQHLLELHLSSNSGFKKYLLCLSRSHHNSITQEGKDLVIYALINAVATRKILKKYDKIHDSKQGQLFKSQVQAMHKEILQSPWLIELMALYINNGDPKSSLFDGCCLTFKDGKPSLTCQLFNSYKVDIDLTCSICLDTVFDPVALTCGHVFCYTCSCSAASVTIVDGLKAADPKEKCPLCREKGVHEGAVHLEELNILLGQRCKEYWKERLGMERVERVRQAKEHWESVCRAAMGI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242016g00002 322 SMART ring_2 218 266 IPR001841 -
Stsc242016g00002 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 320 IPR013083 -
Stsc242016g00002 322 ProSiteProfiles SPX domain profile. 1 155 IPR004331 -
Stsc242016g00002 322 ProSiteProfiles Zinc finger RING-type profile. 218 267 IPR001841 -
Stsc242016g00002 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 322 IPR033326 -
Stsc242016g00002 322 SUPERFAMILY RING/U-box 210 269 - -
Stsc242016g00002 322 CDD RING-HC_BAH1-like 208 281 - -
Stsc242016g00002 322 Pfam Zinc finger, C3HC4 type (RING finger) 215 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242016g00002 Stsc-Chr242016 14674 17684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242016g00002 215 267 C3H Transcription Factor Family AT4G28270 41.379 1.23e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242016g00002 K16275 - gmx:100787904 451.44