Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242016g00001 ATGTCCTCTGATTGGATCACTTCCCTCTCATGTTCTTCAACATCATCATCACTCTCAACTCTACCTCAATGGTTAAGATTTGTGTTCCTCTCACCATGTCCTCAGAGAGCTTTGTTTTCTGCTGTTGATGTTCTTCTCTTATTCACCTTCACTGTGTTTGCCATAATAAAGCTTTACCAGAAGTTCTTTTCAAATGGCAACAACAACAACAGCAACAGCATCATCACTTCCAATGGCCACAACAACCACCATAACAATGATCTCAACAAGCCCCTTATCAGAAACAACAGTAGTTTCACCAAAACAGTAACCATATGGTTCAAACTAACTCTCATTGCAACATCTGTTTTGGCTGCACTTTTCATTGTTGCTTCCATCTTGGTGTTCTGCAGTTCCATGATTCAGTCTCCATGGAAGGTGCTTGATGGAGTGTTTTGGTTGGTCCAGGCCATAACACAAATTGTGCTCGCAATCTTGATCATCCATGAGAAGAGATTTGAAGCTGTTAATCACCCTGTGTCCCTTAGAATCTATTGGATTGCAAGTTTCATTGTTGTTTCTTTGTTTACAGCTTCCGGGGTTATACGTTTCTCCACGTTAGATGTGGACACTTTTGCAGTGGATGACATAGTTTCCTTCATTTCTCTCCCTATATCACTTTTTCTTCTCTGTGTTGGGATCAAAGGGTCAACTGGGATTAAGTCCAGTGAAGAATCACAAGTTCTTATTAATGGTGAAATCAAAGTATCTGATGAGACCATATCAAATGTCACTGGTTTCGCTTCGGCTTCTATTGTATCCAAGGCCTTTTGGATTTGGATAAACCCTTTGTTGAATAAAGGGTATAAGTCACCACTTAAGATTGATGAAATTCCATCACTTTCTCCTCAGCATAGAGCTGAGAGGATGTCAGTGATATTCGAATCGAAATGGCCTAAATTGCATGAGAGTTCGAAGCATCCGGTTCGGACCACATTGGTCCGGTGTTTCTGGAGAGAGATCCTATTCACTGCTTTCCTTGCTGTTGTGAGACTATGTAAGCTTGGAATGCTTATAAGATGCACCCTCATCACTTCTCTGTACAAAAAGGGACTGAAGCTAACTTGCTCAGCAAGGCAAGACCATGGTGTTGGTCCAATTGTCAATTACATGGCTGTGGACACTCAGCAACTCTCTGACATGATGCTGCAGCTTCACGCCGTGTGGATGATGCCATTCCAAGTTGGCATAGGCTTGTTCTTGCTCTACAATTGTTTAGGTGCTTCAGTGGTTACTGCACTGATTGGACTTCTTGCTGTTCTGGTTTTCATTGTGATAACCACTAGGAACAACAAGCAGTACCAGTTTAAGGCCATGATGAACCGCGATTCGCGTATGAAGGCTGTCAATGAGATGCTTAATTACATGCGTGTGATCAAGTTCCAGGCCTGGGAAGATCATTTCAATGATAGGATCTTGACATTCCGTGGCTCCGAGTTCGGGTGGCTGTCAAAGTTTTTGTACTCAATTTGTGGCAACATCATTGTGTTGTGGAGCACTCCTTTAGTCATATCCACACTCACATTTGGCACAGCTATTCTTCTTGGAGTTCCATTAGATGCAGGCACAGTTTTCACCACTACAACCGTGTTTAAGATCCTGCAGGAGCCTCTAAGGACCTTTCCACAATCCATGATTTCGCTTTCACAGGCATTGGTGTCACTTGGAAGGTTGGATAGGTACATGTCTAGCAGGGAATTGGCAGAAGATTCGGTCGAAAGAGACGAAGGGTGCAACGGAAGCATTGCTGTGGAGGTTAGAGATGGAACATTTAGCTGGGATGATGATGCCAAAGAGCAAGACTTGAAGAATATCAATTTGGAGATCAACAAAGGAGAACTCACAGCTATTGTTGGGACTGTAGGGTCTGGAAAATCTTCTCTCCTTGCATCAATTCTTGGTGAGATGCAGAGAGTTTCCGGAAAGGTTAAGGTTTTTGGGAGTGTTGCCTATGTTGCACAAACAGCTTGGATTCAAAATGGTACAATTGAAGAAAACATTCTCTTTGGTTTACCAATGGACAGACAGAAGTACAATGAAGTCATCAAGGTTTGTTGCTTGGAGAAGGACTTGGAAATGATGGACCATGGGGATCAGACAGAAATCGGAGAGCGAGGCATCAACCTGAGTGGTGGCCAAAAGCAGCGCATACAACTCGCCAGGGCCGTGTATCAAGACTCTGATGTTTATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCACATACTGGCTCCGAAATATTTAAGGAATGTGTGAGAGGAGTTCTAAAAGGCAAGACCATAATTCTTGTAACTCATCAAGTGGACTTCTTGCACAATGTAGATCTTATAATGGTGATGAGGGATGGCACTATAGTCCAATCAGGAAAGTACAATGATCTACTTGATTCTGGACTAGATTTTGGTGCTTTGGTAGCTGCTCATGAGACCTCCATGGAGCTAGTTGAACAAGGTGCAGCAAATTCTGGCGAAAATTCGAACAAACCATTGAAATCTCCAAAGGGTGTTTCCAATCACAGAGAGGCAAATGGAGAAAGCAATTCTCATGATGCACCAAATTCTAAGAAGGAAGGTTCTAAACTCATCAAAGAAGAGGAGAGGGAAACTGGGAAAGTTAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGTTGGTGGGGAATCATTGCAGTGATTTTTCTCTCTGTGGTGTGGCAAGGATCTATGATGGTAAGTGATTATTGGCTGGCGTATGAAACCTCGGCCGAGCGCGCAGAACTCTTCGATGCCTCTACGTTCATCACAGTATATGGAATTATTGTAGCAGTTTCAATTGTTCTGATAGTGCTAAGGTCTTACTCTGTCACAATCTTGGGACTAAGGACTGCACAGATTTTCTTCTCCCAAATTCTTCATAGCATCTTGCATGCTCCCATGTCTTTCTTCGACACCACTCCATCCGGAAGAATTCTTAGTAGAGCATCCACTGATCAGACCAATGTTGATATTTTTATCCCATTGTTCCTCCAATTTGTTGTGGCAATGTACATTACAGTGATCAGCATCTTCATCATCACATGTCAAAATTCTTGGCCAACAGTCTTCTTGCTACTTCCTCTTCTTTGGTTGAACATATGGTACCGGGGCTATTTTCTATCCACATCTCGCGAATTAACTCGACTTGATTCGATTACAAAGGCACCTGTGATTCATCATTTCTCTGAAAGCATTTCTGGGGTCATGACTATTCGAGCATTCAGAAAGCAGAAGGAATTTTGTGATGAAAACGTTAACAGGGTTGTTATGCTTGGTGCAGAAAATGTTGGTTTGTCTCTTTCATACGGATTGTCGTTGAACTCGGTGTTGTTTTGGGCAATATACATGAGCTGTTTCATTGAGAACAAAATGGTTTCTGTTGAGAGGATAAAGCAGTTCACAAACATTCCTTCAGAAACAGCATGGAACATTAAGGATCGGTTGCCTCCTTCGAATTGGCCCGGTCAAGGAAATGTTGATATCAAAGACTTGCAGGTGAGATATAGACCAAACACTCCTTTGGTTCTTAAAGGCATAACTTTAAGCATTAATGGAGGAGAAAAGGTTGGTGTGGTTGGTAGAACTGGGAGTGGAAAATCAACTTTGATTCAAGTGTTCTTTAGGCTGGTTGAACCTACAGGAGGGAAAATAATCATTGATGGCATTGACATATCAGCATTAGGGCTTCATGATCTTCGATCAAGGTTCGGTATCATCCCTCAGGAGCCTGTCCTTTTTGAAGGCACAGTCAGAAGTAACATTGATCCAACTGGACAATACACAGATGAAGAGATTTGGAAGAGTTTGGAACGTTGTCAACTAAAAGAAGCAGTGGCTTCGAAGCCCGATAAGCTTGAATCTTTAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGTTGCTTTGCTTAGGGAGGGTGATGCTTAAGCAAAGCAGGCTCCTGTTCATGGATGAAGCAACTGCTTCTGTTGATTCTCAAACTGATGCTGTGATTCAGAGGATCATCAGAGAGGACTTCGCGGCGCGCACCATCATCAGCATTGCTCATAGAATACCAACTGTCATGGACTGTGATAGAGTCCTAGTTGTAGATGCTGGGCTTGCTAAGGAATTTGACACACCCTCCAATTTGATTCAGAGGCCATCACTCTTTGGAGCATTAGTTCAAGAATATGCCAACCGTTCCAGTGGACTATAA 4266 0.4269 MSSDWITSLSCSSTSSSLSTLPQWLRFVFLSPCPQRALFSAVDVLLLFTFTVFAIIKLYQKFFSNGNNNNSNSIITSNGHNNHHNNDLNKPLIRNNSSFTKTVTIWFKLTLIATSVLAALFIVASILVFCSSMIQSPWKVLDGVFWLVQAITQIVLAILIIHEKRFEAVNHPVSLRIYWIASFIVVSLFTASGVIRFSTLDVDTFAVDDIVSFISLPISLFLLCVGIKGSTGIKSSEESQVLINGEIKVSDETISNVTGFASASIVSKAFWIWINPLLNKGYKSPLKIDEIPSLSPQHRAERMSVIFESKWPKLHESSKHPVRTTLVRCFWREILFTAFLAVVRLCKLGMLIRCTLITSLYKKGLKLTCSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGASVVTALIGLLAVLVFIVITTRNNKQYQFKAMMNRDSRMKAVNEMLNYMRVIKFQAWEDHFNDRILTFRGSEFGWLSKFLYSICGNIIVLWSTPLVISTLTFGTAILLGVPLDAGTVFTTTTVFKILQEPLRTFPQSMISLSQALVSLGRLDRYMSSRELAEDSVERDEGCNGSIAVEVRDGTFSWDDDAKEQDLKNINLEINKGELTAIVGTVGSGKSSLLASILGEMQRVSGKVKVFGSVAYVAQTAWIQNGTIEENILFGLPMDRQKYNEVIKVCCLEKDLEMMDHGDQTEIGERGINLSGGQKQRIQLARAVYQDSDVYLLDDVFSAVDAHTGSEIFKECVRGVLKGKTIILVTHQVDFLHNVDLIMVMRDGTIVQSGKYNDLLDSGLDFGALVAAHETSMELVEQGAANSGENSNKPLKSPKGVSNHREANGESNSHDAPNSKKEGSKLIKEEERETGKVSLHIYKLYCTEAFGWWGIIAVIFLSVVWQGSMMVSDYWLAYETSAERAELFDASTFITVYGIIVAVSIVLIVLRSYSVTILGLRTAQIFFSQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDIFIPLFLQFVVAMYITVISIFIITCQNSWPTVFLLLPLLWLNIWYRGYFLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFRKQKEFCDENVNRVVMLGAENVGLSLSYGLSLNSVLFWAIYMSCFIENKMVSVERIKQFTNIPSETAWNIKDRLPPSNWPGQGNVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDEEIWKSLERCQLKEAVASKPDKLESLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQRIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGLAKEFDTPSNLIQRPSLFGALVQEYANRSSGL 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242016g00001 1421 MobiDBLite consensus disorder prediction 829 877 - -
Stsc242016g00001 1421 CDD ABC_6TM_ABCC_D2 903 1154 IPR044726 GO:0140359
Stsc242016g00001 1421 FunFam ABC transporter C family member 10 343 579 - -
Stsc242016g00001 1421 CDD ABCC_MRP_domain2 1177 1397 - -
Stsc242016g00001 1421 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 335 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242016g00001 1421 FunFam ABC transporter C family member 3 1162 1413 - -
Stsc242016g00001 1421 SUPERFAMILY ABC transporter transmembrane region 336 579 IPR036640 GO:0005524|GO:0016020
Stsc242016g00001 1421 Pfam ABC transporter 1196 1344 IPR003439 GO:0005524
Stsc242016g00001 1421 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 597 820 IPR003439 GO:0005524
Stsc242016g00001 1421 Pfam ABC transporter 615 748 IPR003439 GO:0005524
Stsc242016g00001 1421 FunFam ABC transporter C family member 4 580 839 - -
Stsc242016g00001 1421 CDD ABC_6TM_ABCC_D1 334 571 IPR044746 GO:0140359
Stsc242016g00001 1421 MobiDBLite consensus disorder prediction 856 877 - -
Stsc242016g00001 1421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 815 IPR027417 -
Stsc242016g00001 1421 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1179 1413 IPR003439 GO:0005524
Stsc242016g00001 1421 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 904 1100 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242016g00001 1421 MobiDBLite consensus disorder prediction 829 846 - -
Stsc242016g00001 1421 CDD ABCC_MRP_domain1 597 797 - -
Stsc242016g00001 1421 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 261 1108 - -
Stsc242016g00001 1421 Pfam ABC transporter transmembrane region 904 1103 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242016g00001 1421 Pfam ABC transporter transmembrane region 336 551 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242016g00001 1421 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524|GO:0016887
Stsc242016g00001 1421 SUPERFAMILY ABC transporter transmembrane region 900 1159 IPR036640 GO:0005524|GO:0016020
Stsc242016g00001 1421 Gene3D - 1162 1411 IPR027417 -
Stsc242016g00001 1421 Gene3D ABC transporter type 1, transmembrane domain 866 1160 IPR036640 GO:0005524|GO:0016020
Stsc242016g00001 1421 Gene3D ABC transporter type 1, transmembrane domain 327 574 IPR036640 GO:0005524|GO:0016020
Stsc242016g00001 1421 Gene3D - 575 842 IPR027417 -
Stsc242016g00001 1421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1172 1412 IPR027417 -
Stsc242016g00001 1421 SMART AAA_5 1205 1389 IPR003593 GO:0016887
Stsc242016g00001 1421 SMART AAA_5 624 797 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242016g00001 Stsc-Chr242016 7086 13429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242016g00001 597 851 Calmodulin-binding Proteins AT2G36910 29.091 2.35e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242016g00001 - K05666 gmx:100793361 2254.56