Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc242015g00004 | ATGGCTCAGAAAACAGAGAAAGAAGAAACTGAGTTCAAGGTTCCAGAAACCATTACCCCTTGCGTCAACAATTGCGGCTTAACAGGTAATCCAGCCACGAACAACATGTGCCAGAACTGCTTCAAAGCCACCACCGCCACGGCCGCCGCCGCTGCGTCCGCAACTACAACAACAACGTCGACGGCGATCTCGCAGCAGAATTCTAGATTCTCCGATGAGAAAGCCACCGCAACGCCCAGATCTGCCATGTCATCGCGCTCGCCGAAGAGATCTCACCCGTCGAACGAAGAGGAGAATCCGCGAGAGGCTAATTCCGGAACAGGTCGTGGCGAGACGACGTCGTCGGAGGCAAAGCGCGTGGTGAATCGGTGCTCAGGTTGCCGTAGGAGAGTTGGTCTCACCGGATTCCGTTGCCGGTGCGGCGAGCTCTTCTGCGCGGAGCACCGGTACTCCGATCGCCACGAGTGCACCTACGATTACAAAGCAGCAGGAAGGGAAGCCATCGCGAGAGAGAATCCGGTGGTTAAAGCCGCGAAGATCGTTAAGGTCTGA | 552 | 0.5652 | MAQKTEKEETEFKVPETITPCVNNCGLTGNPATNNMCQNCFKATTATAAAAASATTTTTSTAISQQNSRFSDEKATATPRSAMSSRSPKRSHPSNEEENPREANSGTGRGETTSSEAKRVVNRCSGCRRRVGLTGFRCRCGELFCAEHRYSDRHECTYDYKAAGREAIARENPVVKAAKIVKV | 183 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc242015g00004 | 183 | Gene3D | - | 108 | 169 | IPR035896 | - | |
| Stsc242015g00004 | 183 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 19 | 182 | - | - | |
| Stsc242015g00004 | 183 | MobiDBLite | consensus disorder prediction | 58 | 89 | - | - | |
| Stsc242015g00004 | 183 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 21 | 68 | - | - | |
| Stsc242015g00004 | 183 | SMART | AN1_Zf_4 | 124 | 161 | IPR000058 | GO:0008270 | |
| Stsc242015g00004 | 183 | Pfam | A20-like zinc finger | 20 | 42 | IPR002653 | GO:0003677|GO:0008270 | |
| Stsc242015g00004 | 183 | ProSiteProfiles | Zinc finger AN1-type profile. | 118 | 164 | IPR000058 | GO:0008270 | |
| Stsc242015g00004 | 183 | MobiDBLite | consensus disorder prediction | 90 | 104 | - | - | |
| Stsc242015g00004 | 183 | ProSiteProfiles | Zinc finger A20-type profile. | 15 | 49 | IPR002653 | GO:0003677|GO:0008270 | |
| Stsc242015g00004 | 183 | SUPERFAMILY | AN1-like Zinc finger | 111 | 177 | IPR035896 | - | |
| Stsc242015g00004 | 183 | SMART | A20_3 | 18 | 42 | IPR002653 | GO:0003677|GO:0008270 | |
| Stsc242015g00004 | 183 | FunFam | Zinc finger A20 and AN1 domain-containing stress-associated protein 1 | 1 | 71 | - | - | |
| Stsc242015g00004 | 183 | FunFam | Zinc finger AN1-type containing 6 | 94 | 179 | - | - | |
| Stsc242015g00004 | 183 | Gene3D | - | 1 | 97 | - | - | |
| Stsc242015g00004 | 183 | Pfam | AN1-like Zinc finger | 124 | 161 | IPR000058 | GO:0008270 | |
| Stsc242015g00004 | 183 | MobiDBLite | consensus disorder prediction | 58 | 115 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc242015g00004 | Stsc-Chr242015 | 18396 | 18947 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc242015g00004 | 8 | 183 | C2H2 Transcription Factor Family | AT3G52800 | 38.068 | 1.14e-34 | 118 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc242015g00004 | - | - | adu:107463072 | 322.783 |