Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242013g00003 ATGCCGTCTCTCCCCTCCCCGGCGGGGAGAATCCACCGCCTGGAAATGGAGAATTTCAAGTCCTACAAGGGCCACCAAGTAATCGGCCCTTTCTTTGACTTCACCGCCATCATCGGCCCCAACGGCGCCGGAAAGTCGAACCTCATGGACGCAATCAGCTTCGTCCTCGGCGTCCGCACCGGCCAGCTCCGTGGCGCGCAGCTGAGGGACCTCATCTACGCCGCCGATGACAAGGAGAAGGAGCAGAAGGGACGCAGGGCATTCGTCCGGCTCGTCTACCAGCTCAACAACAATAACGGTAGTAACGGTTCGGAAACTGAGATAACGTTTACTCGAGCAATCACCAGCGCCGGCGCTAGCGAGTACCGAATCGATGCTAACATCGTCAGTTGGGATGTTTACAATGCCAAGCTCAAGTCACTGGGGATTCTTGTCAAGGCTCGCAATTTTCTCGTCTTTCAGGGTGATGTGGAATCCATTGCATCAAAAAACCCAAAAGAACTTACTGCCCTTCTAGAGCAGATATCTGGCTCTGATGAGCTCAAGAGGGACTACGAGAAATTTGAAGAAGATAAAGGTACGGCTGAAGAAAAATCAGCACTTGTCTATCAGAAGAAAAAGACAGTGGTTATGGAGAGAAAACAGAAGAAGGAACAAAAAGAAGAGGCCGAGAAACATCTCCGCCTGCAAGAACAACTGAAATCTATGAAGAAAGAACATTTCCTGTGGCAGTTGTTCAATATAGAAAAAGACGTTGCTAAAACAAATGAGGAGCTTGATGACGAGGAAAAACGCCGTAAAGAAGTTATGGAAGAACTAGAAAAGTTTGAACATGAGGCTAGTAAAAAGAAAAAGGAGCAAGCCAAATATCTGAAAGAGATTGCACTGCGTGAAAAGAAAATTGCTGAGAAAAGTAGCAAACTTGACAAAAGTCAACCTGAGCTCCTCAAGCTGCGAGAGGAAATTAATCGTATCAATTCAAAAATTAAGAAAAGCAATAAGGAGCTTGAAAAGAAAAGAGCAGAACGGAGGAGACATGCTGATGATATAGAAGAGCTACAGAAAGGCATACAGGATCTTACAGCAAAAATGGCAGTCCTACAAGAAAGGGGTCGAGATGTTCGTGATCAACTACAGTTAGATGGTGATGACTTGGAAGAATATTTTCGAATCAAGGAAGAAGCTGGAATGAAAACTGCAAAGCTAAGAGAGGAGAAAGAGCTTCTAGATAGGCAGCAGCATGCTGATAGTGAAGCTAAAAAGAATTTGGAAGAAAATCTTCAACAGTTGGAAAACAGGATGTCTGAGTTGAATTCGCAAGAAGAACAGATGAGGACAAGGCTAAAAAAAATTCTTGGTGGTTCTGAAGGAAACAAGAATGAGCTTGAGAAATTGAAAAAAGAACTGCGTGTTATGGAGGAGAAACATCGTGATTCTAGGACTAAACACAAAAGCTTGGAGCTAAAAATTAGTGAAATAGAAAATCAGCTACGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGCTAGGCTGTCTCAGGCTGTGGAGACTCTGAAACGCCTGTTTCAGGGGGTCCATGGACGCATGACTGATCTTTGCAGGCCAACACAGAAGAAGTATAACCTTGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGAAGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTAAAAGATCAAAGGCTTCCTCCTCAGACATTCATTCCTCTGCAATCAATTCGAGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGTACAGCAAAACTGGTTTTTGATGTGATTCAATATCCTTTTCCACCAGTGGCTTCTTTGAAAAATCTAGTTGTGAAGCTTAAGTTTGATCCATCCTTGGAGAAGGCACTTCTCTTTGCTGTGGGAAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAGTTTTGGGCTGGAGTGGTGAGAGGTTTAAAGTTGTGACTGTCGACGGAATTCTGCTGACAAAATCTGGCACAATGACTGGTGGCACCAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAACAAAAAGAAAGAGCAGTATGAATCGGAGTTGGAAAAACTTGGATCAATAAGAGATATGCACCTCAAAGAGTTTAATGTATCTCCCCCATTTTCCTTCCTGTTTGAAACTTCTGAACATTGTTTTGCTGTCCGTTATTATTTGGCATCTAATAGCTGCTTATGGCCATTTTACATGGTGTCTTCCACCCTAAAAAGCATCAAAGACAAACTTACAAATTTGAGCCAGGAAAAAGAGAACATCAAAGAAGAAATTAGTCGTATTAGTCCGGAACTGCAGAAGTTAAGAGATGCTGTTGATAAGAAGAAATCAGAAATAAGTAAGCTCGAGAAGAGGATAAATGAAATAACAGATCGGATTTACAAAGACTTTAGCAAGTCAGTTGGCGTTGCAAATATCCGTGAGTATGAGGAAAACCGACTCAAAGATGCTCAAAGTGTTGCAGAAGAGAGGCTAGATCTGAGTAGCCAAATTTCAAAATTAAAATATCAATTGGAATATGAGCAAAATCGAGACATGAGTACAAGAATTCAAGAGCTAGAATCTTTGCTGAATGCTTTACAGAATAATTTAAAACGGGCACAGAACAAAGAAGCTGAAGCAAAGTTGGCTACCGAGAATTCTAGTGAAGAGATTGATCAGCTTAAGAAAGAAGTAAAAGAGTGGAAATCAAAGTCGGAAGATTGTGAAAAAGAAATCCAAGAATGGAAAAAGCAGGCTTCATCAGCCACAACAAACATATCCAAACTTAATCGTCTGATAAACACCAAGGAGGCACATATTGAGCAGCTGATTGTACAAAAGCAGGAAATAATAGAGAAGTGTGAGTTAGAACAGATTAGCCTTCCAACCATATCCGACCCAATGGATATTGGGACCTCAACCCCAGGTCCCGTGTTTGATTTTGATCAGCTGAGTAGGTCACTGAAGGATAAGAACTCTAACAGGGATAAAATTGAGGCGGAATTTAAACAAAAAATGGATTCCTTGGTATCTGAAATTGAAAGAACAGCGCCAAATTTGAAGGCATTGGACCAATATGAAGCTCTGCTTGAAAAGGAAAGAGCGGTAGTTGAAGAGTTTGAATCGGTGAGGAAAGAAGAGAAGGAGATAGCTGATAAATTCAATTCAGTTAAGCAGAGGAGGTATGAATTGTTCATGGATGCTTTCAACCATATATCTGGCAATATAGATAAAATTTACAAACAACTTACGAAGAGTAGCACACATCCGCTGGGTGGAACAGCATATTTAAACTTGGAAAATGAAGATGATCCTTTCCTGCACGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAGAAAACTGTTGCAGCTCTTGCTTTGTTATTTTCCATCCACAGTTACAAGCCTTCACCATTTTTCATATTGGATGAAGTGGATGCTGCATTGGATAACTTGAATGTTGCTAAGGTTGCTGGATTTATCCGTGCAAAGTCGTGCGAAGGAGCAAGGGTTAGCCAGGATGCTGATGGGGGCAACGGTTTCCAGAGTATTGTGATATCACTGAAAGACAGCTTTTATGACAAAGCTGAAGCCTTAGTTGGGGTTTACAGGGACTCTGAAAGAGGCTGTTCGAGGACACTCACATTTGATCTGACTAAATACAGAGAGTCATAG 3783 0.4195 MPSLPSPAGRIHRLEMENFKSYKGHQVIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLRDLIYAADDKEKEQKGRRAFVRLVYQLNNNNGSNGSETEITFTRAITSAGASEYRIDANIVSWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYEKFEEDKGTAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQEQLKSMKKEHFLWQLFNIEKDVAKTNEELDDEEKRRKEVMEELEKFEHEASKKKKEQAKYLKEIALREKKIAEKSSKLDKSQPELLKLREEINRINSKIKKSNKELEKKRAERRRHADDIEELQKGIQDLTAKMAVLQERGRDVRDQLQLDGDDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAKKNLEENLQQLENRMSELNSQEEQMRTRLKKILGGSEGNKNELEKLKKELRVMEEKHRDSRTKHKSLELKISEIENQLRELKADRYENERDARLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRTLGGTAKLVFDVIQYPFPPVASLKNLVVKLKFDPSLEKALLFAVGNTLVCDDLEEAKVLGWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEKLGSIRDMHLKEFNVSPPFSFLFETSEHCFAVRYYLASNSCLWPFYMVSSTLKSIKDKLTNLSQEKENIKEEISRISPELQKLRDAVDKKKSEISKLEKRINEITDRIYKDFSKSVGVANIREYEENRLKDAQSVAEERLDLSSQISKLKYQLEYEQNRDMSTRIQELESLLNALQNNLKRAQNKEAEAKLATENSSEEIDQLKKEVKEWKSKSEDCEKEIQEWKKQASSATTNISKLNRLINTKEAHIEQLIVQKQEIIEKCELEQISLPTISDPMDIGTSTPGPVFDFDQLSRSLKDKNSNRDKIEAEFKQKMDSLVSEIERTAPNLKALDQYEALLEKERAVVEEFESVRKEEKEIADKFNSVKQRRYELFMDAFNHISGNIDKIYKQLTKSSTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRAKSCEGARVSQDADGGNGFQSIVISLKDSFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242013g00003 1260 Pfam SMC proteins Flexible Hinge Domain 525 655 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Stsc242013g00003 1260 Pfam RecF/RecN/SMC N terminal domain 11 145 IPR003395 -
Stsc242013g00003 1260 Gene3D - 995 1259 IPR027417 -
Stsc242013g00003 1260 Coils Coil 700 720 - -
Stsc242013g00003 1260 Coils Coil 178 198 - -
Stsc242013g00003 1260 Coils Coil 455 510 - -
Stsc242013g00003 1260 Coils Coil 795 822 - -
Stsc242013g00003 1260 Coils Coil 315 377 - -
Stsc242013g00003 1260 Coils Coil 413 447 - -
Stsc242013g00003 1260 Gene3D - 485 605 - -
Stsc242013g00003 1260 Gene3D - 618 684 - -
Stsc242013g00003 1260 FunFam Structural maintenance of chromosomes 1A 10 232 - -
Stsc242013g00003 1260 SMART SMC_hinge_2 525 658 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Stsc242013g00003 1260 Coils Coil 873 956 - -
Stsc242013g00003 1260 PIRSF SMC 9 730 IPR024704 GO:0005524|GO:0016887
Stsc242013g00003 1260 PIRSF SMC 759 1257 IPR024704 GO:0005524|GO:0016887
Stsc242013g00003 1260 Coils Coil 206 239 - -
Stsc242013g00003 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1005 1243 IPR027417 -
Stsc242013g00003 1260 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1260 - -
Stsc242013g00003 1260 CDD ABC_SMC1_euk 11 165 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Stsc242013g00003 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 279 IPR027417 -
Stsc242013g00003 1260 Coils Coil 1047 1067 - -
Stsc242013g00003 1260 Gene3D - 10 205 IPR027417 -
Stsc242013g00003 1260 SUPERFAMILY Tropomyosin 766 964 - -
Stsc242013g00003 1260 Coils Coil 245 293 - -
Stsc242013g00003 1260 Coils Coil 767 787 - -
Stsc242013g00003 1260 Coils Coil 1005 1025 - -
Stsc242013g00003 1260 SUPERFAMILY Smc hinge domain 489 707 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242013g00003 Stsc-Chr242013 25015 37704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242013g00003 9 288 Structural Maintenance of Chromosomes family AT5G15920 25.263 1.24e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242013g00003 K06636 - gmx:100791953 1854.72