Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242009g00002 ATGCAGCAAGTTCGAAATTACTATTACTCTGGAGCACAAATAATAAGGAGTTCTTCTCATACAATAACACCATATGATTACATCTTCACAAAGCCAAGATCAAAGGCTGCGGACAAAAAGCAAGCAGCTATAAAACACAGTCAAGCAGAAAAGAGACGTAGGATCAGAATCAACACTCAATATGAGGCCCTCAAAAACCTCTTCCAAAACAAAACAAAAACGGACAAGGCATCATTATTGGCAACTACTGTTGAAATGGTTAAGAATTTGAGAAAAAATAGTATCCTAAAGGAAGCTTCTAGTAGCTCAAGGAAGGAAGTGAACAAAGTTAGTAACCAGAAGAGAATGCAAGAAGCTTGTGGCCCAAGAAACGAAGATGTGTTTCCTAGTTGGGAAGACAAGTGGAGTCTAAAACATGAAGAGGGCCTAATGAAGGCTACATTGAATTGTGAGGATAAGCCAGGATTGATGTCAACAATAGCAAAGGCAATGAGGTCAGTGGATGCCAAGGTTGTGAAGGCTGAGATGGTGAATGTTGGAGGAAGAACTAGGGTTGTGTTGTGGGTCAAGGATTCAAATGGTGATCGTAGATGTGAAGAGATTCTCAAGAGGACACTCAGTACTCTCATGCAAAGGCCAGTCCCTAAGAAGAGGCGTTATACTCAATAA 669 0.4066 MQQVRNYYYSGAQIIRSSSHTITPYDYIFTKPRSKAADKKQAAIKHSQAEKRRRIRINTQYEALKNLFQNKTKTDKASLLATTVEMVKNLRKNSILKEASSSSRKEVNKVSNQKRMQEACGPRNEDVFPSWEDKWSLKHEEGLMKATLNCEDKPGLMSTIAKAMRSVDAKVVKAEMVNVGGRTRVVLWVKDSNGDRRCEEILKRTLSTLMQRPVPKKRRYTQ 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242009g00002 222 CDD ACT_UUR-ACR-like 147 211 - -
Stsc242009g00002 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 92 IPR036638 GO:0046983
Stsc242009g00002 222 SUPERFAMILY ACT-like 147 203 IPR045865 -
Stsc242009g00002 222 Gene3D - 32 93 IPR036638 GO:0046983
Stsc242009g00002 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Stsc242009g00002 222 PANTHER TRANSCRIPTION FACTOR BHLH30 32 216 IPR045847 GO:0003700|GO:0006355
Stsc242009g00002 222 ProSiteProfiles ACT domain profile. 145 222 IPR002912 -
Stsc242009g00002 222 MobiDBLite consensus disorder prediction 98 123 - -
Stsc242009g00002 222 SMART finulus 47 96 IPR011598 GO:0046983
Stsc242009g00002 222 MobiDBLite consensus disorder prediction 98 112 - -
Stsc242009g00002 222 Pfam Helix-loop-helix DNA-binding domain 45 90 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242009g00002 Stsc-Chr242009 2626 3736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242009g00002 46 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 32.955 4.49e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242009g00002 HLH 7.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242009g00002 - - aip:107639898 394.43