Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242008g00002 ATGCAACAACCTCCTTCCGGCTACTGTGGCGACCGCTGCAAGAAGAGGCGCTACCAGCGCCACACACCGCATCAGATACAAGAGATGGAAACGTTCTTCAAGATGTGCCCTCACCCAGATGAGCAGCAAAGGATAGAACTTGGTAATGTTTTGGGGTTAGACCATTCGCAAATCAAGTTTTGGTTCCAGAACAAGCGAACCCAACTCAAGCATCAATACGAACGCAGCGAGAATCTTGCACTGAAGAATGAGAATGAAGAGCTTCGAGCTGAAAACAAGAGCTACAAGGAGTACCTAAGTAATATAATATGTCATAGCTGTGGAGGCCCACGTCCTCCTCCTCCATTGACCTACGACCAGATCAAGCAAGAGAATAACCAGATAAGAGAAAAGATTGAGCGGGTGACAACAATGATGTCTAATTGTGTTCTACAAGATCCAGATAATACTTCCGACCCTGACACCAACATGCCTCAGAATGAGCCTAATGTGGAATCATCTCAGCACAACAACACCGATAACATGGTGCCTCAGACTCAGGGTGTGTCTAATCAAGAACTTGGTAACATGGCATCACCACTTCAAGGCAATAGCATTGACATGCTACCTCCAAGTACAACTAATCAAGGAATTATTGACGACATGCCATTGACTCAGCAGAACAATGACATTAGCATGCCTCAGAATGTGATTAATCAACGAATTGTTGATGACGTACCATCATCTCAGGCTCAGAACAATGAGATTAACGTGACTCTGCCTCTGAGTATTTTGAATAAAGGAATTGGTGTTAACATTGGCATTGTTCCTCCCAGTGCTTTGCTTGATCAAGGAAATTGTAACGTGCCATCATCATCATCACCTGAAAAAATCAACAAAATTAACATTAACCTGCCTTTGGGTTCGCTTAATCAAGATTTTGGTATCTATAGAGCGAAGTCAAATGGCAAAGCATGGGAAACAAGTAGTGGTGGTGACCCTCTAATTAGGTCACTCCCCGTTCCTAACAAACCCATGATTGAAGAGCTTGCAGATGCATCAGTGGAGGAACTTAGAGCCTTGGTTCAAGCAGGGAAGCCTATGTGGGTCAATGGGGCTCACAACTCTGAGATGATTAACGAACAAGAATACTATAGGACTTTCACCGGCGGAATTGGTCCAAGACTCTTGGGTTATAAATCTGAATCTTCAAGGGAATCCAGGGTCATCAACATGCATCATATTAACCTATTTGAGATCCTTAATGATGTGCATCTATGGTCAAGTGTCTTTTGCGGCATTGTTGCAAAAGCAGCAACACTTCAAGTCCTATCAACTGGACAAGCAGGAAGTTATGATGGAATCTTGCAAGTGGTGTCAGCAGAGTTCCAAGTGGCAACACCACTTGTTCCGGCTCGCGAGTACTATTTCCTAAGGTACTGCAAGAAGCTCCAAGATGAGTCATGGGTGGTGGTGGATGCTTCCTTGAAAACTTCACAACCAAATGCAACAATCCCTCCAACCCGAAGAAGGCCCTCCGGTTGCCTGATTCGGCCATCACCAGATGGTTACTCAGCAAAGGTTACCTGGGTTGAACATGTAGAAGTGGATAACAGAACATTAACAGTGAATGCTATGTATAAGCCTCTAGTTGAATCTGGCTTTGCCTTTGGTGCTAGACGCTGGATCGCAGAATTAGATAGACAATGCGAGCGCATATCTACTACACTACAACCCACAACCATGTTACAATCACAAGAAGGCGAACTTAGAGTTTCAAATGAGGAAGCCAGAAAGGGGCTGGTGAAACTGGCAGAGAGAATGGTTATGGACTTTTTAAGTGGTGTTGGTGCTTCTGCTTCAATAACAGAAGATTGGACAACACTAACTCCATCAACAAGTCAAAGCAATATAAGGATCATAACCAGAAAGGTTAAGGACGATCCAGGTAGGCCTTCCGGTATAGTTATCGGTGCCGCAACTTGCTTCCGCCTCCCAGTTCCTCCAAACACCCTCTTTGATTGGATTCGAACCGCAGACTCAAGAGCAAAGTGGGATGTTCTCTGTACCGGAGCTGAAGCTGAGGAATTTGCACGCATAAGAACTGGTTGCGACCCTGGCAACTGTATCACCTTACTCCGTATCAAGAGTTCAGATGCGAAGAACAACGGCATGATAATAGTTCAAGAGAGTAGCAGCGATTCAACGGGGTCATTCGTGATATACGCACCGGTAGATGTGAATTCGATATATCCAGTGATTGGAGGAAGAGATCCAGATGAACTTCCGATTTTGCCCTCGGGAATGGCGATTCTTCCAGATGGATGTAGAAGTGGAAGTTGTTTGGTGACGCTTTCATTCCAGATATTGATTGAGTCAGATCCAAACAAGAAGATATCGATCCGTTCGCTGAGCACCGTTAACCAGTTGGTTAGGGCTACAGTTGACAACATCAAAGCTCTTCTTCAGACTCGGGAGTAA 2460 0.448 MQQPPSGYCGDRCKKRRYQRHTPHQIQEMETFFKMCPHPDEQQRIELGNVLGLDHSQIKFWFQNKRTQLKHQYERSENLALKNENEELRAENKSYKEYLSNIICHSCGGPRPPPPLTYDQIKQENNQIREKIERVTTMMSNCVLQDPDNTSDPDTNMPQNEPNVESSQHNNTDNMVPQTQGVSNQELGNMASPLQGNSIDMLPPSTTNQGIIDDMPLTQQNNDISMPQNVINQRIVDDVPSSQAQNNEINVTLPLSILNKGIGVNIGIVPPSALLDQGNCNVPSSSSPEKINKININLPLGSLNQDFGIYRAKSNGKAWETSSGGDPLIRSLPVPNKPMIEELADASVEELRALVQAGKPMWVNGAHNSEMINEQEYYRTFTGGIGPRLLGYKSESSRESRVINMHHINLFEILNDVHLWSSVFCGIVAKAATLQVLSTGQAGSYDGILQVVSAEFQVATPLVPAREYYFLRYCKKLQDESWVVVDASLKTSQPNATIPPTRRRPSGCLIRPSPDGYSAKVTWVEHVEVDNRTLTVNAMYKPLVESGFAFGARRWIAELDRQCERISTTLQPTTMLQSQEGELRVSNEEARKGLVKLAERMVMDFLSGVGASASITEDWTTLTPSTSQSNIRIITRKVKDDPGRPSGIVIGAATCFRLPVPPNTLFDWIRTADSRAKWDVLCTGAEAEEFARIRTGCDPGNCITLLRIKSSDAKNNGMIIVQESSSDSTGSFVIYAPVDVNSIYPVIGGRDPDELPILPSGMAILPDGCRSGSCLVTLSFQILIESDPNKKISIRSLSTVNQLVRATVDNIKALLQTRE 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242008g00002 819 CDD START_ArGLABRA2_like 337 564 - -
Stsc242008g00002 819 FunFam Homeobox-leucine zipper protein HDG1 8 88 - -
Stsc242008g00002 819 Pfam Homeodomain 15 70 IPR001356 GO:0003677
Stsc242008g00002 819 Gene3D - 10 88 - -
Stsc242008g00002 819 ProSiteProfiles START domain profile. 333 568 IPR002913 GO:0008289
Stsc242008g00002 819 ProSiteProfiles 'Homeobox' domain profile. 12 72 IPR001356 GO:0003677
Stsc242008g00002 819 SMART HOX_1 14 76 IPR001356 GO:0003677
Stsc242008g00002 819 Pfam START domain 343 565 IPR002913 GO:0008289
Stsc242008g00002 819 SUPERFAMILY Bet v1-like 337 566 - -
Stsc242008g00002 819 Coils Coil 811 819 - -
Stsc242008g00002 819 Coils Coil 71 101 - -
Stsc242008g00002 819 Gene3D - 386 547 IPR023393 -
Stsc242008g00002 819 SUPERFAMILY Bet v1-like 587 782 - -
Stsc242008g00002 819 MobiDBLite consensus disorder prediction 144 171 - -
Stsc242008g00002 819 SUPERFAMILY Homeodomain-like 9 74 IPR009057 -
Stsc242008g00002 819 Coils Coil 118 138 - -
Stsc242008g00002 819 CDD homeodomain 15 72 IPR001356 GO:0003677
Stsc242008g00002 819 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 815 IPR042160 -
Stsc242008g00002 819 SMART START_1 342 565 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242008g00002 Stsc-Chr242008 4007 7451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242008g00002 294 813 Homeobox Transcription Factor Family AT4G04890 50.092 7.04e-178 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc242008g00002 START 3.3e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242008g00002 K09338 - gmx:100782240 525.783