Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242008g00001 TATGGTCGTGTATCCATGGGGCAGGTATCTGGTTTCCAAAATCAAATAAATCCGAGTCTGGGTTCCCGTCAACCTCATGATACTTGGAAGGTTTCTCAATCACAAACAATGCTTAATATTAGGGGCCGAGGAAGGAGCCTTTTGATGCCTCTTATTGAAAACAATCCCAATAATGATGTAAACCCCTATGGGATTCGACCTGCGGTGTCAAGGATGGTTTCTGGTATTGCCAATAACGTAGAGCCTCGTCCACCAGTTTTGCCTGGATCTTTTGAAATAAGGCCTTCTGTAACTGTGCATGGTACTCGTCCTCCCACCTTAAATCCAACATTTCCACTGCAAAAGCATGTTAGAAGCCAGTTTGAAGCAATAAATACCAGTAATACCATTATGAATCATGGCCCAAATAAATCTCTGTTCATTCCTGAACAGCCAGGGCTGGACTCTGTTGAAAACAGGGATGCCGTCCAAGGTATTCCAAATAATTCCTTACAATTACAGGGGGGAGTCCATCCACCTTTACCTCCAGGTCGCCCTCCTGCTCCATCTCAAATGATACCTCATCCAAATGCTGGTCCATATGTATCAAACCAACAGCCGGCTGTTGCATATACTAATTTAATTAGTTCGCTTATGTCCCAAGGCGTGATCTCATTGGCTAATCAACCCTCTGGACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGATTCGTCATGAGTCTGCAATCAGTGCCTTATATGGAGATCTCCCTAGACAATGCACGACTTGTGGACTTAGATTCAAATGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACAAAGAACAGGATGTCCAAAAGTCGCAAACAGAAGTCTTCTCGTAAGTGGTTTGTCAGTGACAGGATGTGGCTCAGTGGTGCGGAGGCATTGGGAACAGAATCTGTTCCTGGTTTTCTGCCAACTGAGACAGTAGAAGAGAAAAAAGATGATGAAGAGTTGGCGGTGCCAGCTGAAGAGGACCAGAATACATGTGCATTATGTGGGGAGCCTTTTGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCAATGCACCCACCGGAGCAACAGCGGGCTTGGACAGGTCACAGTTAGGTCCCATTATTCATGCTAAATGCAGATCAGACACTAATACAGCCCCGTCTGAAGATTTTGGGTTAGATGAAGGGGGTGCCAATGAAGAGGGTGGCCAAAGAAAACGAATGCGGAGTTGA 1272 0.4497 YGRVSMGQVSGFQNQINPSLGSRQPHDTWKVSQSQTMLNIRGRGRSLLMPLIENNPNNDVNPYGIRPAVSRMVSGIANNVEPRPPVLPGSFEIRPSVTVHGTRPPTLNPTFPLQKHVRSQFEAINTSNTIMNHGPNKSLFIPEQPGLDSVENRDAVQGIPNNSLQLQGGVHPPLPPGRPPAPSQMIPHPNAGPYVSNQQPAVAYTNLISSLMSQGVISLANQPSGQDSVGTEFNPDILKIRHESAISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKSSRKWFVSDRMWLSGAEALGTESVPGFLPTETVEEKKDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGATAGLDRSQLGPIIHAKCRSDTNTAPSEDFGLDEGGANEEGGQRKRMRS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242008g00001 423 MobiDBLite consensus disorder prediction 392 423 - -
Stsc242008g00001 423 ProSitePatterns Zinc finger C2H2 type domain signature. 257 277 IPR013087 -
Stsc242008g00001 423 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 95 408 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Stsc242008g00001 423 MobiDBLite consensus disorder prediction 1 30 - -
Stsc242008g00001 423 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242008g00001 Stsc-Chr242008 500 2224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242008g00001 195 423 C2H2 Transcription Factor Family AT4G04885 70.306 2.38e-112 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242008g00001 K14400 - gmx:100787354 557.37