Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242004g00005 ATGGTGAAGGACAGAATCAACAACAATGGCAATGGAAATGGAACTAACAATAACAATAACAACAACAGTAATAATAATAAGAGTAAGCTAAGGAAAGGGCTGTGGTCACCAGAGGAAGATGAGAAGCTGATAAGGTACATGATAACCAAGGGACAAGGTTGTTGGAGTGACATTGCTAGAAATGCCGGCTTACAGCGCTGCGGCAAGAGCTGCCGCCTTCGATGGATTAACTACCTCCGACCGGATCTCAAGCGCGGCGCCTTTTCCCTCCAAGAGGAAGAGCTCATCATTCACTTGCACTCCATTCTTGGCAACAGATGGTCACAGATTGCGGCACGTCTACCCGGACGCACTGACAACGAAATCAAGAACTTTTGGAACTCCACTGTCAAGAAACGGTTAAAACTCAACACCAACAACTCAACTTCTTCACCAAACAACAGCGACTCATCAGAGCCTCTTAGCACCACCATGGACAACAATAATCTTGTCATGCCCTTAACTAACAATAATGGTATCACCATGCCCATCAATGACCATCATCATGATCTTATGTCCATATCCATGTGCATGGACAACTCATCCTCATCAACATCATCCTCAACCATGCATACCCATCATCATCATCATCCCATGGTCTTTGGCGACCCCTTTTCCATGTTAAACAACAACAACAATAATCAGTATGAGACGGCTACGACCGGTGTAGCCGGTTTCCATGGTTTTCATTGCGGCGACTACGGCGGGATGTTGGACGAGGAGACTACTAATAAAATGGGGCTATTAGAAGGTGAGTTGTCCCTTCCTCCATTAGAAAGTAGTATTAGAAGAAGCAATGAAGAAGAAGACATTATTATTATTAATAACGAAAATGCCTCGTCATCAATTAATGACATGAAAAGCCATAACAACAACCACTTCAATAATAATAATAATAATAATAATAATAATAATAATAGTTGCTTCAATAACACTACTGGTAACAATAATAATAATATTCAGATTCTGAATAACAACAACTACTCCTCCAATGTAGAAGAGGATTTGTTTGGGTTTGGAAATCATGACCACCAAGTGGAAAACTTAAGAATGGGAGAATGGGACTTCGAGGGTTTGATGCAAGACATTTCCTATTTTCCTTCCCTTGATTTCCAAGTTTGA 1161 0.4117 MVKDRINNNGNGNGTNNNNNNNSNNNKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSLQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTVKKRLKLNTNNSTSSPNNSDSSEPLSTTMDNNNLVMPLTNNNGITMPINDHHHDLMSISMCMDNSSSSTSSSTMHTHHHHHPMVFGDPFSMLNNNNNNQYETATTGVAGFHGFHCGDYGGMLDEETTNKMGLLEGELSLPPLESSIRRSNEEEDIIIINNENASSSINDMKSHNNNHFNNNNNNNNNNNNSCFNNTTGNNNNNIQILNNNNYSSNVEEDLFGFGNHDHQVENLRMGEWDFEGLMQDISYFPSLDFQV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242004g00005 386 ProSiteProfiles Myb-like domain profile. 27 79 IPR001005 -
Stsc242004g00005 386 Pfam Myb-like DNA-binding domain 32 79 IPR001005 -
Stsc242004g00005 386 Pfam Myb-like DNA-binding domain 85 128 IPR001005 -
Stsc242004g00005 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Stsc242004g00005 386 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Stsc242004g00005 386 FunFam Transcription factor MYB46 86 156 - -
Stsc242004g00005 386 CDD SANT 87 130 IPR001005 -
Stsc242004g00005 386 SMART sant 31 81 IPR001005 -
Stsc242004g00005 386 SMART sant 84 132 IPR001005 -
Stsc242004g00005 386 MobiDBLite consensus disorder prediction 136 159 - -
Stsc242004g00005 386 Gene3D - 86 157 - -
Stsc242004g00005 386 FunFam MYB transcription factor 29 85 - -
Stsc242004g00005 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 79 IPR017930 -
Stsc242004g00005 386 MobiDBLite consensus disorder prediction 1 31 - -
Stsc242004g00005 386 PANTHER MYB DOMAIN PROTEIN 55 23 346 - -
Stsc242004g00005 386 MobiDBLite consensus disorder prediction 1 33 - -
Stsc242004g00005 386 MobiDBLite consensus disorder prediction 303 325 - -
Stsc242004g00005 386 Gene3D - 29 85 - -
Stsc242004g00005 386 SUPERFAMILY Homeodomain-like 30 126 IPR009057 -
Stsc242004g00005 386 CDD SANT 35 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242004g00005 Stsc-Chr242004 44000 48047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242004g00005 24 386 MYB Transcription Factor Family AT3G08500 43.784 1.40e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc242004g00005 Myb_DNA-binding 6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242004g00005 K09422 - gmx:100796379 301.597