Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241g00006 ATGGCGTCGGCAGCGGTGTCACGTCGGCTTCGGAATCTGCAGTCGCAACCGGAAAACAAGATCTGCGTGGACTGCTCCCAGAAGAATCCGCAGTGGGCCTCCGTCTCTTACGGCGTCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGCGGCCTCGGAGTCCACATCTCCTTCGTCCGATCCGTCACCATGGACGCATGGTCCGAAATCCAGCTCAAGAAAATGGAAGCTGGCGGCAACAATAACCTCAACTCCTTTCTCGCCTCTTACTCTGTTCCCAAGGAAACCGATATAGTTAAGAAGTACAACACGAAAGCCGCCGCTATCTACCGTGATCGCATCGCGGCAATTGCTGAAGGGCGGCCATGGCGGGATCCGCCTGTTCAGAGGGAGGATCTTGCAGGAGGATTCGCTGCTGGAAAGGGGAAGCCGCCGATGAACGGCGGTAATGGCGGAAACAAGCGGAATGACGGCGATTGGGACGATTGGGGAATTGACGACAGTTTTGGCGGTGATTTGCGGCGGAATCAGTCTGCTGGCGATGTGAGAAGTGTTGGTTATGGTGGTGGCGGTGGTGGTGGGGCGGGGAGGTCTAGGTCGACGGAGGATATTTACACGCGGTCGCAGCTGGAGGCTTCGGCGGCGAACAAGGAGAGCTTCTTTGCCAGGAAGATGGCGGAGAATGACTCGCGGCCGGAGGGGCTACCGCCGTCGAAGGGAGGGAAGTACGTCGGTTTTGGATCGAGTCCTGCTCCGACGGCGTCGCAGAGAAGCAATCAGCAAAACGACTATTTCTCTGTCGTTTCGCAGGGGATTGGTAAATTATCGTTGGCGGCTCAGACTGCTGCTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAAGTCAATGATGTCACTCAGAAGACATGGGGTATAATGAAAGGGGTCATGGCTATGGCTTCAGAGAAGGTAGAGGAGTACACTAGAGATAGTTCAAATGGGATGAATAATAATTGGCAACAAATTGAAAATGGCAGAAATGGTTACCATCAGGATTTCAATCAACAAAACAAGGGATGGAATTCCTCTACCAAAACAGAACAATCTTCTTCTAAGCAATTTAACACCCACAGCTCAAGTTCTTGGGATGATTGGGACAATAGAGGTAGTAGAAATGGAAAACCAGCTAATGGATCAGCAACTCACAATTCAAGCTCTTGGGATGATTGGGGCCACAAAGGCTCCAGGAAGGAAGAGCCAGCAAAAGCATCGGCAGCGAATAATGATGACGGATGGGCTGGCTGGGATGATGACAAAGATGATGGATTTGATGATTCTTATTATGAAAATGGATCTAAAACTAAGAAAGGTGTTACGAACTATGGGAAATCCGATGGTGGCTGGACAGGGGCAGGCTTTGCCTAA 1404 0.5142 MASAAVSRRLRNLQSQPENKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQLKKMEAGGNNNLNSFLASYSVPKETDIVKKYNTKAAAIYRDRIAAIAEGRPWRDPPVQREDLAGGFAAGKGKPPMNGGNGGNKRNDGDWDDWGIDDSFGGDLRRNQSAGDVRSVGYGGGGGGGAGRSRSTEDIYTRSQLEASAANKESFFARKMAENDSRPEGLPPSKGGKYVGFGSSPAPTASQRSNQQNDYFSVVSQGIGKLSLAAQTAASKVKEGGYDQKVNDVTQKTWGIMKGVMAMASEKVEEYTRDSSNGMNNNWQQIENGRNGYHQDFNQQNKGWNSSTKTEQSSSKQFNTHSSSSWDDWDNRGSRNGKPANGSATHNSSSWDDWGHKGSRKEEPAKASAANNDDGWAGWDDDKDDGFDDSYYENGSKTKKGVTNYGKSDGGWTGAGFA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241g00006 467 MobiDBLite consensus disorder prediction 323 401 - -
Stsc241g00006 467 CDD ArfGap_ArfGap1 8 120 - -
Stsc241g00006 467 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Stsc241g00006 467 MobiDBLite consensus disorder prediction 402 417 - -
Stsc241g00006 467 MobiDBLite consensus disorder prediction 135 202 - -
Stsc241g00006 467 MobiDBLite consensus disorder prediction 226 260 - -
Stsc241g00006 467 MobiDBLite consensus disorder prediction 320 467 - -
Stsc241g00006 467 SUPERFAMILY ArfGap/RecO-like zinc finger 7 115 IPR037278 -
Stsc241g00006 467 FunFam ADP-ribosylation factor GTPase-activating protein 1 132 - -
Stsc241g00006 467 SMART arf_gap_3 4 123 IPR001164 GO:0005096
Stsc241g00006 467 PRINTS HIV Rev interacting protein signature 19 38 IPR001164 GO:0005096
Stsc241g00006 467 PRINTS HIV Rev interacting protein signature 38 55 IPR001164 GO:0005096
Stsc241g00006 467 PRINTS HIV Rev interacting protein signature 59 80 IPR001164 GO:0005096
Stsc241g00006 467 ProSiteProfiles ARF GTPase-activating proteins domain profile. 7 123 IPR001164 GO:0005096
Stsc241g00006 467 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 3 394 IPR044519 GO:0005096|GO:0016192
Stsc241g00006 467 Pfam Putative GTPase activating protein for Arf 8 105 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241g00006 Stsc-Chr241 56679 60127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241g00006 8 90 C2H2 Transcription Factor Family AT4G05330 50.000 4.88e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241g00006 K12492 - gmx:100806519 580.482