Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241999g00004 ATGGGTTGGATTCCATGTTCTGGGGCTTCAGGTACTAAGAAGAAGCTGAAGAAGAAGGCTGAGAAGATTCAAGTGCAGGATAATCTTGTTGATCAGATCAAACACCCTTCAGGGAAGTTGAACAGGAATTCATCTGCCAAATCCAAAGATACATCGACAAATGGGAACTCTGAACACATAGCAGCACAGACCTTCTCATTCCGTGAGTTGGCAACTGCAACTAGAAATTTTAGAGCTGAATGTCTTTTGGGTGAAGGAGGCTTTGGTCGAGTATACAAAGGGCGTCTGGAAAGTATTAATCAGGTTGTCGCAATTAAGCAACTTGACCGAAATGGGCTGCAAGGGAATAGGGAATTCCTTGTTGAAGTGCTGATGTTGAGTCTACTTCACCATCCCAACCTTGTAAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAGTATATGCCACTAGGTTCCTTGGAAGACCACTTGCATGATATTCCTCCAGGCAAAAAACGACTTGACTGGAACACAAGAATGAAAATAGCAGCAGGCGCAGCAAAGGGATTAGAATATCTGCATGACAAAGCTAATCCTCCTGTTATATACCGTGATTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGGTATCACCCAAAGTTGTCTGATTTTGGGTTAGCTAAACTTGGCCCGGTTGGGGAGAACACCCATGTATCGACCAGAGTTATGGGCACATATGGATATTGTGCTCCAGAGTATGCGATGACGGGTCAGCTGACTCTGAAATCAGATGTTTATAGCTTTGGCGTAGTTCTTCTAGAAATAATAACTGGAAGGAAAGCAATCGACAATTCAAGATCCACAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCCTGTTTAAAGACCGAAGAAAATTCTCGCAAATGGCCGATCCAACACTCCAAGGTCAATATCCTCCAAGGGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAAGAGCAGGCTAATATGCGTCCGGTAATAGCTGATGTTGTCACAGCTTTGTCCTACCTCGCCTCACAGCAGTACGATCCCAACACACAAAGCCCTCGCCTCGCTCCTGCTACTCCACCGAGAACAAGAAGAGGGTAA 1140 0.45 MGWIPCSGASGTKKKLKKKAEKIQVQDNLVDQIKHPSGKLNRNSSAKSKDTSTNGNSEHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIPPGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRSTGEQNLVAWARPLFKDRRKFSQMADPTLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQQYDPNTQSPRLAPATPPRTRRG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241999g00004 379 MobiDBLite consensus disorder prediction 1 20 - -
Stsc241999g00004 379 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241999g00004 379 Pfam Protein tyrosine and serine/threonine kinase 81 349 IPR001245 GO:0004672|GO:0006468
Stsc241999g00004 379 PANTHER OS07G0668900 PROTEIN 24 363 - -
Stsc241999g00004 379 Gene3D Phosphorylase Kinase; domain 1 46 153 - -
Stsc241999g00004 379 CDD STKc_IRAK 83 351 - -
Stsc241999g00004 379 MobiDBLite consensus disorder prediction 27 57 - -
Stsc241999g00004 379 MobiDBLite consensus disorder prediction 37 57 - -
Stsc241999g00004 379 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Stsc241999g00004 379 PIRSF ILK 15 363 - -
Stsc241999g00004 379 FunFam Serine/threonine-protein kinase PBS1 154 368 - -
Stsc241999g00004 379 FunFam Serine/threonine-protein kinase PBS1 47 153 - -
Stsc241999g00004 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Stsc241999g00004 379 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241999g00004 379 SUPERFAMILY Protein kinase-like (PK-like) 57 351 IPR011009 -
Stsc241999g00004 379 Gene3D Transferase(Phosphotransferase) domain 1 154 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241999g00004 Stsc-Chr241999 42245 45537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241999g00004 35 356 Glycoside Hydrolase AT3G07070 68.634 9.81e-166 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc241999g00004 PK_Tyr_Ser-Thr 9.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241999g00004 - - gmx:100793549 681.404