Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241999g00002 ATGGTGGCTGATGGAGGGGCTCAAGATGTGTGGAGTAACAATCACAGTGATAGGAATGATGGCAGAACAGAAAACCAGAGTGACACAGGGCTGGCAGCAAATTCAGTTTATGGGGTTAAAGCTCTTCAGCCTAATGATTCTATTCTAAATGCCTGTGGAGGAAGCCCGGAAAATTCGTGTGGTCTAAGTGGGGAATGTGAGCAAGGAAGCAAAGGATTTGAGGCAGAGGAAGATGAACCTAGAAGTAAAAGAAGGAGGAATGAGAATCAATCCAATGAAGCAGCCGCGTCGGAGGAAGCAGTAACCGAGCCTCGCATTGTGCTGCAGAGTTCTACAGATTCTGAGATAATTGGAGATGGCTTCCGCTGGAGGAAGTATGGGCAGAAGGTGGTGAAGGGAAATCCATATCCCAGAAGTTATTACAGATGCACAAATGTGAAGTGCAATGTTCGGAAGCACGTGGAGAGAGCAATAGATGATCCAAGAGCATTTGTCACTACATATGAAGGAAAGCACAATCACGAGATGCCAATCAAGAACACCAACCCAAATGTCCCCTCTGAGAAAGATTCACAGGCTTCTCTCAGTAAAGCTGACAAGCCATGA 606 0.462 MVADGGAQDVWSNNHSDRNDGRTENQSDTGLAANSVYGVKALQPNDSILNACGGSPENSCGLSGECEQGSKGFEAEEDEPRSKRRRNENQSNEAAASEEAVTEPRIVLQSSTDSEIIGDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERAIDDPRAFVTTYEGKHNHEMPIKNTNPNVPSEKDSQASLSKADKP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241999g00002 201 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 191 IPR044810 GO:0003700
Stsc241999g00002 201 MobiDBLite consensus disorder prediction 1 31 - -
Stsc241999g00002 201 ProSiteProfiles WRKY domain profile. 112 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241999g00002 201 MobiDBLite consensus disorder prediction 170 201 - -
Stsc241999g00002 201 MobiDBLite consensus disorder prediction 70 92 - -
Stsc241999g00002 201 SUPERFAMILY WRKY DNA-binding domain 111 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241999g00002 201 Pfam WRKY DNA -binding domain 119 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241999g00002 201 Gene3D WRKY domain 102 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241999g00002 201 FunFam WRKY transcription factor 57 103 177 - -
Stsc241999g00002 201 SMART WRKY_cls 117 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241999g00002 201 MobiDBLite consensus disorder prediction 53 107 - -
Stsc241999g00002 201 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241999g00002 Stsc-Chr241999 14292 15326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241999g00002 74 177 WRKY Transcription Factor Family AT1G13960 62.264 2.30e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc241999g00002 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241999g00002 - - gmx:100794069 283.878