Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241998g00010 ATGGGAAGGGGTAAGGTTGAGTTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACATTTGCAAAGAGGAGAAATGGGTTGCTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCATCTTCTCTAACCGCGGCAAACTCTACGAGTTTAGCAGCACTTCAAGCATGATGAGAACTTTGGAGAAGTATCACAAGTATAGTTACAATGCAATAGACTCTGGTCGACCAATCAGTGACACGCAGACAAATTACCAGGATTATGTGAGACTAAAAGCAAAGGTTGAAGTCCTCCAACGTTCCCAGAGGAACCTAATGGGGGAAGATCTTGCTCAAATGAATACAACTGAGTTGGACCAGCTTGAGAATCAACTTGAGGTAGCACTTAGGAACATTAGGTCCACTAAGACTCAGTTTATGCTTGACCAACTTGCTGATCTTCAGAATCGGTTAGAAGAAATGAATAATGAGGTGCCTCTGGAAGATGTGGGGATGGGGCCCACCATTCACTATAACCATAACCATAACCGCTTTCCTCATCCTCATCCTCCTCCATCGGATCAATCATTTTTTCAACCTGTTCTTGGAGTTAATTCCAACTTGCAAATTGGATACAATCAGAGCATTCATCATGATGTGAACGTTGGAGCTTCATCCTTAACCATGCAAGGATTCGTCACTGGTTGGATGCTTTGA 714 0.43 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMRTLEKYHKYSYNAIDSGRPISDTQTNYQDYVRLKAKVEVLQRSQRNLMGEDLAQMNTTELDQLENQLEVALRNIRSTKTQFMLDQLADLQNRLEEMNNEVPLEDVGMGPTIHYNHNHNRFPHPHPPPSDQSFFQPVLGVNSNLQIGYNQSIHHDVNVGASSLTMQGFVTGWML 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241998g00010 237 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc241998g00010 237 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Stsc241998g00010 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc241998g00010 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc241998g00010 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc241998g00010 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc241998g00010 237 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Stsc241998g00010 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc241998g00010 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc241998g00010 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Stsc241998g00010 237 ProSiteProfiles K-box domain profile. 87 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241998g00010 237 FunFam MADS-box transcription factor 1 13 87 - -
Stsc241998g00010 237 Coils Coil 117 163 - -
Stsc241998g00010 237 Pfam K-box region 86 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241998g00010 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241998g00010 Stsc-Chr241998 35498 40724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241998g00010 1 237 MADS-box Gene Family AT5G15800 49.049 2.26e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc241998g00010 K-box 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241998g00010 K09264 - gmx:100804810 315.849