Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241998g00008 ATGGGAAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATTAATAGGCAAGTGACGTTCTCGAAGAGAAGATCTGGTTTGTTGAAGAAGGCAAACGAAATCTCAGTTCTATGCGATGCCGAAGTCGCACTCATCGTCTTCTCCACCAAAGGCAAGCTCTTCGAGTATTCCAGCGATCCCTGTATGGAAAGGATTCTTGAACGATATGAGAGGTATTCATATGCGGAGAAGCAACTCATTTCAAATGATCAGCAGCTGCCAAGTGAAAACTGGATACTAGAACACGCAAAGCTCAAGGCTAGGGTGGAAGTTCTACAGAAAAATCAAAGGAATTTTATGGGGGAAGATCTCGGTAGCCTAAGTCTAAAAGAACTTCAGAATTTGGAACACCAACTTGAATCCGCCCTTAAGCACATTAGATCACGGAAGAACCAAGTCATGTATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAAGCACTCCAGGAACAAAACAATGCACTAGCCAAGAAGATTAAGGAAAAAGAGAAGGCTCAAGAGGACATGCAAGCTACTACCCGTGTGCCCTCTCTTCTTATAACCGAACAGTTGGAGCCCTTCAATAATATTGGAGGCAATAGTACCCCTCAAGCAGCTGTAGGAGGTGATGGATTATTATTAGTAGATAATGAAGAAAGTACTACACCACCTCAACCTAATAATAATCATAATAATAATAACCTTCTTCCCCCTTGGATGGTTCGTCCTATAATGAATGAATGA 765 0.4183 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAEKQLISNDQQLPSENWILEHAKLKARVEVLQKNQRNFMGEDLGSLSLKELQNLEHQLESALKHIRSRKNQVMYESISELQKKDKALQEQNNALAKKIKEKEKAQEDMQATTRVPSLLITEQLEPFNNIGGNSTPQAAVGGDGLLLVDNEESTTPPQPNNNHNNNNLLPPWMVRPIMNE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241998g00008 254 MobiDBLite consensus disorder prediction 225 243 - -
Stsc241998g00008 254 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241998g00008 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc241998g00008 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc241998g00008 254 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Stsc241998g00008 254 MobiDBLite consensus disorder prediction 224 254 - -
Stsc241998g00008 254 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Stsc241998g00008 254 Coils Coil 152 189 - -
Stsc241998g00008 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc241998g00008 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc241998g00008 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc241998g00008 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc241998g00008 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc241998g00008 254 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241998g00008 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 191 - -
Stsc241998g00008 254 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Stsc241998g00008 254 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Stsc241998g00008 254 Coils Coil 123 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241998g00008 Stsc-Chr241998 18450 24821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241998g00008 1 206 MADS-box Gene Family AT1G26310 59.375 1.80e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc241998g00008 K-box 6.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241998g00008 K09264 - gmx:100784742 319.701