Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241994g00007 ATGTCAGGGCAGCAACAAGCGCTAGCCGGATTAACACTTGATGACGTCTTATCAAATCAAAAATCATTTTACCACTCACAGTCCTACAAGAAAAAACGCAAGCCTTGGAAAGCCTTCAAGGACACGTTTCTGCTAAAGCGTTACGGCTCTGCTTGGACATCGGCAATTCGAGTTCCTACCTCGGACATTACCCTCCCTAACCCAAACAGCCGAATCTTTACCCCATTTGGTCGCCGCAACTCCCTCAAACACTTTGAATCCATCTCCAACGACGATTCAACTCACCACCCTCACATGGCTGACCAACCCAACAACGATGGCAACGTTGATGACGTCCCAGCTGCCTTTCCTCCCCCATCACTAGCAGCCAGGGGCACCTTCTCTCGTCGGAGCTCCACCCGCTATAGTTCTTCTGAGGCTACATTCACTGCTGGCGATCCCACAGAGCCAGCCCCTGCACTACTCCGTCCTCAGCTTTCTCGGCGAAACTCCTCTGGCATGGCCATAGGGTCAGAGCCGTACCGGAAGGGTCGCGTGGTAACATTTCGAGACAACTTCAACGATGAGGACCAAGATGATGAAGACAGCTTGCGTCCTGATGGAAGTAGGACTCTGTCTGCAAGAGAGGCAGTAGCAGCACAAGAGGCGGCAGAGGCGGCTGCTGCTGGGGAGGTTGTTGATGGTGGAGAGGAAGAAGGGGAAGCGCAACCGGCGATGATGTCACTAATGGATCTACTGGAGGAGACTGATAGAGAGATGGGGTTTGAAGGATCGAGGTACATTCTGAGTGAGGATGAAGATTTTGATGAGGACGAGGAAGATGAGGGTGGTGATGATATGGAATACACTTGCTCAGTTTGCATGGTAAGGCATAAGGCTAATGCTATCAGCCATTGTGGTCACTCTTATTGTAGGATGTGTTCTAGGGAACTCATGGTTGGTAAGGGCAATTGCCCTCTCTGCAATAATTTCGTGGTGGAGATTCTTGAGATCTTTTGA 999 0.5075 MSGQQQALAGLTLDDVLSNQKSFYHSQSYKKKRKPWKAFKDTFLLKRYGSAWTSAIRVPTSDITLPNPNSRIFTPFGRRNSLKHFESISNDDSTHHPHMADQPNNDGNVDDVPAAFPPPSLAARGTFSRRSSTRYSSSEATFTAGDPTEPAPALLRPQLSRRNSSGMAIGSEPYRKGRVVTFRDNFNDEDQDDEDSLRPDGSRTLSAREAVAAQEAAEAAAAGEVVDGGEEEGEAQPAMMSLMDLLEETDREMGFEGSRYILSEDEDFDEDEEDEGGDDMEYTCSVCMVRHKANAISHCGHSYCRMCSRELMVGKGNCPLCNNFVVEILEIF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241994g00007 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 332 IPR013083 -
Stsc241994g00007 332 ProSiteProfiles Zinc finger RING-type profile. 284 322 IPR001841 -
Stsc241994g00007 332 Pfam Zinc finger, C3HC4 type (RING finger) 282 324 - -
Stsc241994g00007 332 PANTHER OS01G0917900 PROTEIN 5 332 - -
Stsc241994g00007 332 SMART ring_2 284 321 IPR001841 -
Stsc241994g00007 332 MobiDBLite consensus disorder prediction 125 144 - -
Stsc241994g00007 332 CDD RING-HC 282 321 - -
Stsc241994g00007 332 SUPERFAMILY RING/U-box 283 328 - -
Stsc241994g00007 332 MobiDBLite consensus disorder prediction 209 234 - -
Stsc241994g00007 332 MobiDBLite consensus disorder prediction 87 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241994g00007 Stsc-Chr241994 32250 36773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241994g00007 12 332 C3H Transcription Factor Family AT3G07120 33.631 2.18e-41 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241994g00007 - - adu:107464709 380.563