Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241992g00003 ATGATGATGGGAACCGTTTCTTCTTCAGCTAGTTCTAGCAGCAGCTTGATGAGTAGTAACATCAACATGCTGGATTTCACTTATAACAAGCCACCACCACATGTAGCGCCCGATCAAAACTCCTCCGAGTGTAATAGTAGAATTAGCAGGAGTAGTGTTGGAGTTTGTAATAGTAATAACAAGAATAAGAAGGGTAGTAGGGTTCAACAACATCTGAAGGTGAGAAAGGAGAAGCTTGGTGATAGAATCACAGCACTTCACCAGCTTGTTTCTCCATTTGGAAAGACAGATACAGCTTCTGTGCTAATGGAAGCCATTGGATATATAGGATTCCTCCATGCTCAAATTCAGGCACTCACCTCTCCTTACTTGCACAACACCAATCCACAACAACACTCTCTAACTGATCAGGTACAAGGAGTATTAGAAACAAATTGTGTATTTCCTGAGGACCCCGGTCAGGTGTTGAATAATAATGAGCATGGTGGCCTCAAAAGAAAGGGAGGTCCAACTAGTGTACATCATGAAGTAGAAGATAGTAATAACAAAGACTTGTTCTTCTTCAAGACTAGAGGCTTCTGCTTGCTTCCAATATCATGCATCCAACATTTTGGAACTCCAAATGCTCCTGATTACTGCACATCACCATTTGCCACCGGATTTTAA 666 0.4159 MMMGTVSSSASSSSSLMSSNINMLDFTYNKPPPHVAPDQNSSECNSRISRSSVGVCNSNNKNKKGSRVQQHLKVRKEKLGDRITALHQLVSPFGKTDTASVLMEAIGYIGFLHAQIQALTSPYLHNTNPQQHSLTDQVQGVLETNCVFPEDPGQVLNNNEHGGLKRKGGPTSVHHEVEDSNNKDLFFFKTRGFCLLPISCIQHFGTPNAPDYCTSPFATGF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241992g00003 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Stsc241992g00003 221 CDD bHLH_AtbHLH_like 73 119 IPR045239 -
Stsc241992g00003 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 126 IPR036638 GO:0046983
Stsc241992g00003 221 FunFam Transcription factor bHLH123 family 73 135 - -
Stsc241992g00003 221 Gene3D - 71 138 IPR036638 GO:0046983
Stsc241992g00003 221 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 201 - -
Stsc241992g00003 221 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241992g00003 Stsc-Chr241992 3981 5956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241992g00003 23 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 51.449 5.62e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241992g00003 - - zju:107404296 179.104