Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241992g00002 ATGATGGGTGGTGGGAACCCTAATTTGTGGTGGAGCATGCAGCAGCATCCACCATCTGTGAATATCCCTCATCATCAACAACATCACTATCATCTTCTTCATGCCGGATCTACTTCTTCTACTTGTTCTTCTTCTTCTTCCACTGATCCCCCTCATCCTCATCATCAGTCATGGACCCAACTTCTTTTAAGTGGGCAAGAAGAGAAGCTGGGATTCAGTGAAGTTTCCCAAAGTGGCCATGGAGATGATGATTACTCTCACATGATGATGGGAACCGTTTCTTCTTCAGCTAGTTCTAGCAGCAGCTTGATGAGTAGTAACATCAACATGCTGGATTTCACTTATAACAAGCCACCACCACATGTAGCGCCCGATCAAAACTCCTCCGAGTGTAATAGTAGAATTAGCAGGAGTAGTGTTGGAGTTTGTAATAGTAATAACAAGAATAAGAAGGGTAGTAGGGTTCAACAACATCTGAAGGTGAGAAAGGAGAAGCTTGGTGATAGAATCACAGCACTTCACCAGCTTGTTTCTCCATTTGGAAAGACAGATACAGCTTCTGTGCTAATGGAAGCCATTGGATATATAGGATTCCTCCATGCTCAAATTCAGGCACTCACCTCTCCTTACTTGCACAACACCAATCCACAACAACACTCTCTAACTGATGTACAAGGAGTATTAGAAACAAATTGTGTATTTCCTGAGGACCCCGGTCAGGTGTTGAATAATAATGAGCATGGTGGCCTCAAAAGAAAGGGAGGTCCAACTAGTGTACATCATGAAGTAGAAGATAGTAATAACAAAGACTTGTTCTTCTTCAAGACTAGAGGCTTCTGCTTGCTTCCAATATCATGCATCCAACATTTTGGAACTCCAAATGCTCCTGATTACTGCACATCACCATTTGCCACCGGATTTTAA 924 0.4264 MMGGGNPNLWWSMQQHPPSVNIPHHQQHHYHLLHAGSTSSTCSSSSSTDPPHPHHQSWTQLLLSGQEEKLGFSEVSQSGHGDDDYSHMMMGTVSSSASSSSSLMSSNINMLDFTYNKPPPHVAPDQNSSECNSRISRSSVGVCNSNNKNKKGSRVQQHLKVRKEKLGDRITALHQLVSPFGKTDTASVLMEAIGYIGFLHAQIQALTSPYLHNTNPQQHSLTDVQGVLETNCVFPEDPGQVLNNNEHGGLKRKGGPTSVHHEVEDSNNKDLFFFKTRGFCLLPISCIQHFGTPNAPDYCTSPFATGF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241992g00002 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Stsc241992g00002 307 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 287 - -
Stsc241992g00002 307 MobiDBLite consensus disorder prediction 36 57 - -
Stsc241992g00002 307 CDD bHLH_AtbHLH_like 160 206 IPR045239 -
Stsc241992g00002 307 MobiDBLite consensus disorder prediction 243 262 - -
Stsc241992g00002 307 FunFam Transcription factor bHLH123 family 160 222 - -
Stsc241992g00002 307 Gene3D - 156 223 IPR036638 GO:0046983
Stsc241992g00002 307 MobiDBLite consensus disorder prediction 71 93 - -
Stsc241992g00002 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 213 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241992g00002 Stsc-Chr241992 3981 5956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241992g00002 56 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 40.865 6.72e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241992g00002 - - gmx:100806379 199.904