Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241991g00001 ATGGAATTCGAGGAGCAAGAAGAGCAAGAGGAAGAGCTGTGTGTGCAAGGAGACACGGGTTATGACCCGGTTGAAAACCCGACCCGGGTTAAAATGCCCGGTTCGGAGCCCATGTTGGTGGTTCAACCCATGAGCATGAGAAACAACAGCAACAGCAGCGGCATGGTCAAGCCAAGATACAGAGAGTGTTTGAAGAACCACGCCGTGGGGATCGGCGGCCACGCACTCGACGGTTGCGGCGAGTTCATGCCCGCCGGTACCGAAGGAACCCTCGACGCACTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACTGAACTCGCCGGAGCAGGAGTAGGAAGCCCTTACCTGCTGACTCACCACCCCCACCCTCACCACCACCAGCCACCGCCGTTTGCGGCTTACTACCGTACTCCGGCGGGTTACTTGCACGTGAGCGGGGGACAGCAGAGAGCGGGAACGCTAGCTCTCCCTTCGACCTCCGGCGGCGGAACAGCGCGGGATTTCGAGCAGGAAGATGTGAGTGGCGGTGGCGGTGGCGGAGGAGGAGGGTCTTCGTCACGGAAGAGGTTCAGGACGAAGTTTACGCAGGAGCAGAAGGAGAAGATGCTGGAACTTGCGGAGAGATTGGGATGGAGGATTCAGAAACACGACGAAGGTGCGGTTCAAGATTTTTGTAACGAAACGGGTGTGAAGCGTCATGTTCTCAAGGTTTGGATGCATAACAACAAACACACCCTCGGTAAGAAGCCCTAG 771 0.5772 MEFEEQEEQEEELCVQGDTGYDPVENPTRVKMPGSEPMLVVQPMSMRNNSNSSGMVKPRYRECLKNHAVGIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKETELAGAGVGSPYLLTHHPHPHHHQPPPFAAYYRTPAGYLHVSGGQQRAGTLALPSTSGGGTARDFEQEDVSGGGGGGGGGSSSRKRFRTKFTQEQKEKMLELAERLGWRIQKHDEGAVQDFCNETGVKRHVLKVWMHNNKHTLGKKP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241991g00001 256 MobiDBLite consensus disorder prediction 1 15 - -
Stsc241991g00001 256 NCBIfam homeobox domain, ZF-HD class 193 249 IPR006455 -
Stsc241991g00001 256 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 109 IPR006456 -
Stsc241991g00001 256 FunFam Zinc-finger homeodomain protein 2 187 254 - -
Stsc241991g00001 256 MobiDBLite consensus disorder prediction 158 196 - -
Stsc241991g00001 256 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 252 - -
Stsc241991g00001 256 MobiDBLite consensus disorder prediction 1 34 - -
Stsc241991g00001 256 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 109 IPR006456 -
Stsc241991g00001 256 Pfam ZF-HD protein dimerisation region 59 110 IPR006456 -
Stsc241991g00001 256 SUPERFAMILY Homeodomain-like 180 254 IPR009057 -
Stsc241991g00001 256 Gene3D - 180 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241991g00001 Stsc-Chr241991 17951 19340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241991g00001 1 252 ZF-HD Transcription Factor Family AT4G24660 48.617 2.54e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc241991g00001 ZF-HD_dimer 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241991g00001 - - aip:107639896 403.29