Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241990g00001 ATGGCTAGTTTTGAAAATGATGAGCTGCCGATGCTGTCGGAAAAGGATGCAGAACAATATGATGAAACCCTGAATTCCAAATTGCAAAGATTCTTATCCAGGACAAAAAGTTCAATTGCAATTCCTATGAGGTCTCTGGAGTCATATGATAGTGAAACTAGTTTCGTTGGACACACTGGTCCACTGATGAGTGAGAGAAAAGCAACCCCCTTTGTACAAATGAGCGGTCCTCTATATGCTACCGCTGGAACTGGAGGTCATTTACAGCAGAGGATGGTTGTTTCCGGAAGAAAAGAAGATGAAAGAAAGACAGAAAAATTTGATGCTTTCCGCAGTGCCGGTTCAAAATACTGGCATACCAACAAACATGATAAGGAAAATGAACACTTAATGAGGTCTGGACAGCTTGGAATGTGTGATGATCCTTATTGCACTACTTGCCCAACATATTTCAAGGCTTCTCACAATAGAAATCCAAAAGCTTCGACATTATTTGATCCCAAGAGCCACTGCCATGCAGGATTGCTTGATCTTGGTGGCTCTGCCAAATCATCAATCCGGTGCTCGAAGTACAAGAGCCAAAGTAGTACAATTGGAGCCTTCGGATCATTTTGGTGTAGAGTCCCAATATCAGGCCTCAGGGATCATAATTGTATTGTTATCAACTGGTCAGTGACAACAGCACTTGTTATTGTTAGAAGCTTGAATGATTTGGTATATTTCTTTAACATTCTTCTCCAGTTCAGATTGGCTTTTGTTTCTCCTGAGACAAGAGTGGTTGGTACTGGAGATTTAGAGGACCATCCAAAGAAAATCGCACTTCATTACCTTCGGGGTTATTTTTTTCTCGACTTATTTGTTGTATTTCCTCTTCCTCAGATAATGATATTGTTTGTCCTGCCAAAATCCCTTGGGGGAGCAAATTATGCTAAGAATCTTCTGCGTGCAGCGATCCTTGTGCAGTACATCCCCAGATTGTTTAGATTTCTGCCAATGCTAATTGGCCAGTCTCCATCAGGATTTATATTTGAGTCAGCCTGGGCAAATTTTATAATAAACCTTCTAATTTTTATGCTGTCTGGACATGTTGTCGGCTCCTGCTGGTACCTCTTTGGTCTACAGAGGGTTAACCAATGTTTGCGAAATGCCTGCCACACCTCTAAGATCCGTGGATGCATGACATTCATTGATTGTGGGCATGGTCATGATGGAATCTTTCAGCTTGACCAAACATCAAATCAGTGGAACAACAATGCTGATGCAAATGCCTGCTTGAATCCCCCATCTAATGGTAGTGGTTTTGCTTATGGGATATATCAAAATGCTGTACCTCTTACTACAGAAACTAATGTGATCAACAAATACATCTATTCTTTGTTTTGGGGATTCCAGCAAATCAGTACTTTGGCTGGTAATCTAGTCCCTAGCACTTTTGTGTGGGAAGTCGTTTTCACTATGGCCATTATAGGATCTGGACTCTTGCTTTTTGCTATTCTCATCGGAAACATACAGAATTTTCTTCAAGCTCTTGGGCGAAGGAGGCTAGAAATGCAACTCAGAGGCCGAGACGTGGAGCAATGGATGAGCCATCGACGCTTACCAGAAAATCTAAGAAGGAGAGTACGACAGGCCGAACGTTATTCTTGGGCTGCGACAAGGGGAGTGAATGAAGAAATGCTTATGGAAAATTTACCAGAAGATCTGCAGAGAGACATAAGGCGTCATCTCTTCAAATTTATTAAGAAAGTTCGAATTTTTGCTTTGATGGATGAACCTATCCTAGATGCAATTTGTGAGAGATTAAGACAAAGGACATACATCAAAGGAAGTAAAATATTGAGTATGGGTGGTTTGGTAGATAAGATGGTATTTGTGGTGCGAGGAAAGCTTGAGTGCGAAGGTGAAGATGGAATAAGACTTCCATTATCCGAAGGGGATGCTTGTGGCGAAGAACTTCTAACATGGTATCTAGAACATTCTTCCGTTAGCACAGATGGCAGGAAAGTAAGGCTTCCAGGACAAAGGTTGCTTAGCAACAGAACAGTGAGATGCTTAACAAATGTAGAGTCATTTTCGCTACGCGCCGCAGACCTTGAAGAAGTGACAATCCTTTTCACAAGATTCTTGCGGAGTCCGCGTGTTCAAGGGGCCTTAAGGTATGAATCACCTTATTGGAGATCCTTGGCTGCAATTCGGATTCAAGTTGCCTGGAGATACTGGAAGAAACGCCTAAGTCGTGCTGATTCTGCAGTTTAA 2256 0.4198 MASFENDELPMLSEKDAEQYDETLNSKLQRFLSRTKSSIAIPMRSLESYDSETSFVGHTGPLMSERKATPFVQMSGPLYATAGTGGHLQQRMVVSGRKEDERKTEKFDAFRSAGSKYWHTNKHDKENEHLMRSGQLGMCDDPYCTTCPTYFKASHNRNPKASTLFDPKSHCHAGLLDLGGSAKSSIRCSKYKSQSSTIGAFGSFWCRVPISGLRDHNCIVINWSVTTALVIVRSLNDLVYFFNILLQFRLAFVSPETRVVGTGDLEDHPKKIALHYLRGYFFLDLFVVFPLPQIMILFVLPKSLGGANYAKNLLRAAILVQYIPRLFRFLPMLIGQSPSGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRNACHTSKIRGCMTFIDCGHGHDGIFQLDQTSNQWNNNADANACLNPPSNGSGFAYGIYQNAVPLTTETNVINKYIYSLFWGFQQISTLAGNLVPSTFVWEVVFTMAIIGSGLLLFAILIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPENLRRRVRQAERYSWAATRGVNEEMLMENLPEDLQRDIRRHLFKFIKKVRIFALMDEPILDAICERLRQRTYIKGSKILSMGGLVDKMVFVVRGKLECEGEDGIRLPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLLSNRTVRCLTNVESFSLRAADLEEVTILFTRFLRSPRVQGALRYESPYWRSLAAIRIQVAWRYWKKRLSRADSAV 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241990g00001 751 SUPERFAMILY Voltage-gated potassium channels 220 513 - -
Stsc241990g00001 751 ProSiteProfiles cAMP/cGMP binding motif profile. 585 653 IPR000595 -
Stsc241990g00001 751 CDD CAP_ED 585 701 IPR000595 -
Stsc241990g00001 751 Gene3D Jelly Rolls 583 707 IPR014710 -
Stsc241990g00001 751 Gene3D - 215 510 - -
Stsc241990g00001 751 Pfam Ion transport protein 227 513 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc241990g00001 751 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 206 746 - -
Stsc241990g00001 751 Gene3D Helix hairpin bin 512 577 - -
Stsc241990g00001 751 SUPERFAMILY cAMP-binding domain-like 513 702 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241990g00001 Stsc-Chr241990 6066 12633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241990g00001 1 663 Ion Channels AT3G17700 55.123 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241990g00001 K05391 - gmx:100795427 1114.75