Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241989g00002 ATGTTAAAGGCAAAGGTATTCAATGGTGCGAACGTGTTCATGTCGCGGAACCTGGTTCCACCAGAGGTATTCGATGCTCTTCACGATGTGCTCAAAGGCAATGGTGCACAAGTGAACCTCTGTTGCGATCCTTCCCGCAATGGTCCGAATGATTACCATGTCATTTCTTGCAGTAAACACGAGAAGTTTGAGGATCTTAAAGCCAAAGGCTGCAAATTGCTTGGACCCAGATGTGTTCTTTCATGTGCTAAAGAACTTAAGCCTTTGCCTAAACATGGATTTACGTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCTGGCTTCGATACCAATGAAAAGGTTAAGATAGAAGAGATGGTCACTGAAATGGGTGGTGTTCTACATACTAAAGCATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTGGCTGCAAAATACAAGTGGGCTTTGAATATACTGAAGAAACCGATAGTTACTTATGAATGGTTAAAGAAATGCTCAGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTGACGATTTGTGTTACTGGGATTCCAGCAGCTCCTGAAGGTGACAAATATAAGGTAGCAAAACGTTGGGGCCACATTCATACTGTGACAAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTTTGAATGAGGAGTCCTACCCAGTTCAGAATGGATCTGTATCTTCACAGAAAGTGATTAAGGACATGTATGTACAGCATAGCCAAGAAAATCGTATTGGGAAATTGCAATCTGGAGTATCCTCAGCTGTTACAGATCCAAACATGCCAGTTTCTTCTTATGCTGAGTTTGTAGATAAAGACCCAGAAGCTACATGTTCAGAATACACATCTTCTCTTATGAACGCTGCTACATCTGTTAAAGATACAAATGCTGAAGCACCTCGAGGACATCCCAGTGATGACTTGAACCTTGATGGCCCTGTTGCCAATGATTCTGAATCTGATGATAATGATCTGTACTTATCTGAGTGCAAAATCTTACTTGTTGGCTTTGAAGCTTCTGACATGCGGAAACTAGTTAACATGGTGCGGAAAGGTGGAGGCTCCCGATATATGTCTTTAAATGCCAAGCTGACTCACATTGTTGTTGGAAATCCTTCAGAACAGGAAAAGAAGGATGTAAGGAGTCTTGCCTCTTTGGGTGTCATTTATGTTGTTAAAACATCCTGGCTTGAAGATTGTAACCGCGCAAAGAAAGAAGTCCCTGTTCTAAGGAGACACATTGCATCTGATCTAATTCTTCCAAAAGGAAGCAATGTCAATGGAGCATTAACAGGCATGTCCACGGTTCAAGTTAAAAGCTGTAGTTTTCCTCAAAGCTTGAAGAGTGCTCAGGTGGTGGGAGTTATGGCCTCTGGAGGTGTAAAGCCAGTATCTTTGGTGGAAAAGAACAAAGATAAGCTGGATATGGGTACAAGTGTTCACTCATTGAGTAAAGCAATGGGGAAAAATCAACATGCTGTTAATAAGATCACAGTTCAAAAGATGACAGTGACACAAGATTCACGTGTAGAATATGTCAAGTCCACAACAGTTTTCAAAGGGAAAATGTTTTGTTTCTCAGATTTATTTCCTGAGGAAAGGAGAACTGAGGTCATCGAATGGATACATCAAGGGGGAGGACAAGTAATAAGTGGGAAAGTAAAAAATGGTGTCCATTTTACGGTTGAATGTCATGGTGTAACACCCATGATGACAGGAAACTCCCAAAGTACATATGTTTCCACTCATTGGATACGATCTTGTTTAGAGGTTGGATACCTAAAGGATGTTGACAGTCATATTCTTTATTCTCCACTTACCTGTCAAGTTCCCTTGCCCGGGTTTGAAAGGTTTCGGTTTTGTGTTTCACAATATGAGGAGCAAGAAAGAATTCTACTACGGAACTTTTGTTTTGTTTTGGGAGCCAAATTCATAGAGAGGTTAACGAAGAAGGTTACCCATTTATTGTGTAAATTCAAGGATGGACCCAAGTATGACGCTGCTTGTAAATGGGGGATCCAGTCAGTTACTTCTGAATGGCTATTTGAATGTGTCAAACAGAATGGAGTTGTTGCCACTGACTGTTTTTTACCAAGAGAAATGACTCTTCAGGATCGACTGGCAGGACTTCGTACTGCGAGTCAATTTCCCACTCAGGCTGCTCAAATGATAAGTGATCTACCATCCCAGTTTCCAAGTCAATCTCAAAATTTGACAGACAAAGTAAATAGAGGCTTATCTAGAGGACTTGCCAGTAATGAGACTGATTTAAAACTATCAAATATTCAGAGCAAAAAGGCAAGGCTTGTGGAAGAGCCTGGACTATATGACAAGGCATCTTCTGCAGTAGATTCAGGTATTCATCATGTCAAAGGAATTAACTTTTCTGAAGACAATTCGGTAAAAGATGCTGGACAGGTTCCTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGTAAGATCTATTCATCTGATTGTACAATCGTTTGCGAAGACAATGCCAATGCTAATGCTGTCTTTGGATTGTCGAAACACTGGTTAAACAGAGGTGGCAGAAAAGATGATGATGTTGAGGCTTCTGGAGACAGAGGAACTGAAGCCTATGACGGTTTCAGTGAAACACAAACAGAATCTCAGGTTGTTGGTTACGAAGAAGATTTGTCCGGAAGGCAAATGCTTATTGACAGAGTTCGAACTCGAAGTAGTGCACATTAA 2793 0.4117 MLKAKVFNGANVFMSRNLVPPEVFDALHDVLKGNGAQVNLCCDPSRNGPNDYHVISCSKHEKFEDLKAKGCKLLGPRCVLSCAKELKPLPKHGFTCCLAMDGVKVLASGFDTNEKVKIEEMVTEMGGVLHTKASLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKKCSEEHRVVPQESYKVLPFSGLTICVTGIPAAPEGDKYKVAKRWGHIHTVTRKWFDQSIARRACLNEESYPVQNGSVSSQKVIKDMYVQHSQENRIGKLQSGVSSAVTDPNMPVSSYAEFVDKDPEATCSEYTSSLMNAATSVKDTNAEAPRGHPSDDLNLDGPVANDSESDDNDLYLSECKILLVGFEASDMRKLVNMVRKGGGSRYMSLNAKLTHIVVGNPSEQEKKDVRSLASLGVIYVVKTSWLEDCNRAKKEVPVLRRHIASDLILPKGSNVNGALTGMSTVQVKSCSFPQSLKSAQVVGVMASGGVKPVSLVEKNKDKLDMGTSVHSLSKAMGKNQHAVNKITVQKMTVTQDSRVEYVKSTTVFKGKMFCFSDLFPEERRTEVIEWIHQGGGQVISGKVKNGVHFTVECHGVTPMMTGNSQSTYVSTHWIRSCLEVGYLKDVDSHILYSPLTCQVPLPGFERFRFCVSQYEEQERILLRNFCFVLGAKFIERLTKKVTHLLCKFKDGPKYDAACKWGIQSVTSEWLFECVKQNGVVATDCFLPREMTLQDRLAGLRTASQFPTQAAQMISDLPSQFPSQSQNLTDKVNRGLSRGLASNETDLKLSNIQSKKARLVEEPGLYDKASSAVDSGIHHVKGINFSEDNSVKDAGQVPHAVPDVAAAIEDLLEQTSKIYSSDCTIVCEDNANANAVFGLSKHWLNRGGRKDDDVEASGDRGTEAYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSAH 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241989g00002 930 ProSiteProfiles BRCT domain profile. 341 433 IPR001357 -
Stsc241989g00002 930 SUPERFAMILY BRCT domain 599 718 IPR036420 -
Stsc241989g00002 930 MobiDBLite consensus disorder prediction 877 905 - -
Stsc241989g00002 930 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Stsc241989g00002 930 Gene3D BRCT domain 628 719 IPR036420 -
Stsc241989g00002 930 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 928 - -
Stsc241989g00002 930 Gene3D BRCT domain 98 190 IPR036420 -
Stsc241989g00002 930 Gene3D BRCT domain 191 243 IPR036420 -
Stsc241989g00002 930 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Stsc241989g00002 930 FunFam Transcription coactivator 530 627 - -
Stsc241989g00002 930 SMART BRCT_7 97 174 IPR001357 -
Stsc241989g00002 930 SMART BRCT_7 631 707 IPR001357 -
Stsc241989g00002 930 SMART BRCT_7 535 611 IPR001357 -
Stsc241989g00002 930 SMART BRCT_7 343 423 IPR001357 -
Stsc241989g00002 930 CDD BRCT_TopBP1_rpt2_like 632 707 - -
Stsc241989g00002 930 CDD BRCT 103 170 - -
Stsc241989g00002 930 FunFam Transcription coactivator 97 185 - -
Stsc241989g00002 930 Gene3D BRCT domain 38 94 IPR036420 -
Stsc241989g00002 930 Gene3D BRCT domain 333 430 IPR036420 -
Stsc241989g00002 930 MobiDBLite consensus disorder prediction 314 340 - -
Stsc241989g00002 930 Pfam twin BRCT domain 104 166 IPR001357 -
Stsc241989g00002 930 Pfam twin BRCT domain 638 699 IPR001357 -
Stsc241989g00002 930 SUPERFAMILY BRCT domain 343 427 IPR036420 -
Stsc241989g00002 930 SUPERFAMILY BRCT domain 536 623 IPR036420 -
Stsc241989g00002 930 ProSiteProfiles BRCT domain profile. 533 621 IPR001357 -
Stsc241989g00002 930 SUPERFAMILY BRCT domain 186 241 IPR036420 -
Stsc241989g00002 930 Pfam BRCA1 C Terminus (BRCT) domain 343 419 IPR001357 -
Stsc241989g00002 930 Gene3D BRCT domain 530 626 IPR036420 -
Stsc241989g00002 930 ProSiteProfiles BRCT domain profile. 634 717 IPR001357 -
Stsc241989g00002 930 FunFam Transcription coactivator 323 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241989g00002 Stsc-Chr241989 5205 15797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241989g00002 1 928 Core DNA Replication Machinery Family AT1G77320 48.441 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241989g00002 K10728 - gmx:100804966 1194.87