Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241987g00003 ATGGACCAAAAAAATGAACGAGTTTATATAAATAGCCTAAAACTAGGGTTTATCACACAACGGGAGAGCTGCAACAAGAAAGAGAGAGCTTCCAAGCTTGGTTCCGCCTCCTCCTCCTCCTTGCCGTCGTTGACGTCTTCGATGGATTCTGGGATTAAGCATGCTGTTGTTGTGAAGGTTATTGGGCGTACAGGGTCCAGAGGTCAGGTGACCCAGGTTAGAGTGAAGTTCTTGGATGATCAGAACCGTCACATTATGAGGAATGTGAAGGGACCAGTCAGAGAAGGTGACGTTCTCACCCTGCTCGAATCTGAAAGAGAAGCAAGGAGGTTGCGTTGA 339 0.4749 MDQKNERVYINSLKLGFITQRESCNKKERASKLGSASSSSLPSLTSSMDSGIKHAVVVKVIGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDVLTLLESEREARRLR 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241987g00003 112 PANTHER 40S RIBOSOMAL PROTEIN S28 48 112 IPR000289 GO:0003735|GO:0005840|GO:0006412
Stsc241987g00003 112 CDD S1_S28E 53 112 IPR000289 GO:0003735|GO:0005840|GO:0006412
Stsc241987g00003 112 ProSitePatterns Ribosomal protein S28e signature. 103 111 IPR028626 -
Stsc241987g00003 112 MobiDBLite consensus disorder prediction 30 47 - -
Stsc241987g00003 112 SUPERFAMILY Nucleic acid-binding proteins 48 112 IPR012340 -
Stsc241987g00003 112 Pfam Ribosomal protein S28e 52 111 IPR000289 GO:0003735|GO:0005840|GO:0006412
Stsc241987g00003 112 Hamap 30S ribosomal protein S28e [rps28e]. 48 112 IPR000289 GO:0003735|GO:0005840|GO:0006412
Stsc241987g00003 112 FunFam 40S ribosomal protein S28 45 112 - -
Stsc241987g00003 112 MobiDBLite consensus disorder prediction 26 47 - -
Stsc241987g00003 112 Gene3D - 44 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241987g00003 Stsc-Chr241987 6421 7052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241987g00003 48 112 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 1.30e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241987g00003 K02979 - egr:104443388 98.2117