Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241982g00006 ATGGAGGCCAGGATGAGGAGAACAACAGTTGAGAAGATGAGGAAGGATAGCACAGTTGATGAGGTAGAAGAGGAGCTAGAAGAGGAAGATGAGAGTGGTGGTGGTGGTGATGCTGCAGGCCTTGCAGCAGAAGAAGAGAAGAAGAAAAGTTCTGTTGGAGGTGGAAGAAGAGGGTCAAATGGAGGAGCAGGAGGAGTTTCTCCACCTTCCTGCCAGGCAGAGAGGTGTGGTGCTGACTTGTCTGAGGCCAAAAGGTACCATCGCCGCCATAAGGTTTGTGAGTTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGCCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAATTTGATGAAGCCAAAAGAAGCTGCCGGAGGCGCTTGGCTGGACACAACGAGAGGCGCCGGAAGAGCAACATAGAACATTGCAACGAGGGAACTGGCCGCGGCGGCAAAGGGCAACCCCCTAAGGAAAGTCACTGCAGATCCGCTGACGATCGGGGAAGAACTCAGATGAACATTGCAGGGAGCTCTGGCTACAAGTCCTTCCATATCAGATGA 582 0.5292 MEARMRRTTVEKMRKDSTVDEVEEELEEEDESGGGGDAAGLAAEEEKKKSSVGGGRRGSNGGAGGVSPPSCQAERCGADLSEAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNIEHCNEGTGRGGKGQPPKESHCRSADDRGRTQMNIAGSSGYKSFHIR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241982g00006 193 Gene3D - 61 132 IPR036893 GO:0003677|GO:0005634
Stsc241982g00006 193 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Stsc241982g00006 193 MobiDBLite consensus disorder prediction 1 74 - -
Stsc241982g00006 193 MobiDBLite consensus disorder prediction 136 193 - -
Stsc241982g00006 193 MobiDBLite consensus disorder prediction 1 20 - -
Stsc241982g00006 193 FunFam Squamosa promoter-binding-like protein 14 63 132 - -
Stsc241982g00006 193 Pfam SBP domain 71 144 IPR004333 GO:0003677
Stsc241982g00006 193 SUPERFAMILY SBT domain 69 149 IPR036893 GO:0003677|GO:0005634
Stsc241982g00006 193 Coils Coil 12 32 - -
Stsc241982g00006 193 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 162 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241982g00006 Stsc-Chr241982 42430 43266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241982g00006 57 170 SBP-box Gene Family AT1G53160 64.957 1.65e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc241982g00006 SBP 6.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241982g00006 - - gmx:100787416 237.269