Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241981g00006 ATGCCCTATTCTTCTAATACCAATGAGTTTGAATATCCTAACAGGAAGAGGAAGCGTGATTTCATGGCAACAACTAATAATGATTCTGATTTCTGCTATGGTTATGGTGGTAGTAGTAGCAGTAGATATGGTTATGGTGGTGGAATCAAAGAGAATCCGAAGAAAACAAAGAGCTCTAAGTTCTGCAAAGAATGTGGGAAAGGTTTTCCATCGCTTAAGGCTCTTTGTGGCCACATGGCTTGTCACTCAGACAAAGAAAGAGGAACCAATTCCAATAACAGGTTTCAGTTTGAATCCAACTCTGGGATCAGTGAGAAGCAGAAATTGGTTGTGGATAGCAATTCTGACACTGAAACCTCTGTTCCAGTTAGGAGATCCAAGAGGATGAGATTCAAGAATGTTTCCAACAACAACAACTCGAACCCCTTTTATTGTTCTTCCTCTTCTTCTGTGTCTGAGGTTGAGCAGGAGCGAGAAGAGGTTGCTAGGTGTTTGATGATGCTGTCCAAGGATACCTCCTACAAGGATCAATTCATGCTTTTCTCCAATAACAATTCGGTTGTTCTTGAGGCCAAATTGCCTTTTGTTGATGAGAAGAAGAAAATTGGTTATGATTCGGACAATTCGGATTCTGGGTATTTCAGATATGGTCCCAAGAAGAAGGTAGATTCTGATTATTATTATGATGATGATGATGAAGTTAACAACAATGGTGATTCAAGGAGAAACAAGAATTGGAAGCTTGAGTCTTTGACAAGTGAAGATTTCTCTGCATTGGAAAGCCATGAGTTCAATAATAACAGTACAGACACTGATTCAAAATCTCACAGCAACAAGAAGATCCATGTGAACAACAAGGGTAATAATAAGATTAAGAGTAAGAAGAAGAAGAAGAAGAAGTTGTTGAAGTCAAAGAAGAACAAGGAACATGAGTGTCCAATTTGCAACAGAATGTTTAGGTCAGGACAAGCATTGGGGGGTCACAAAAGATCACATTTTGTTGGAGGATCTGAAGAGAACACACTTTTCATCAGACCAGATGCTACTGCTACTGTTGTTCCATGCCTAATTGATCTCAATCTACCTGCACCTGTTGAAGATGCACCTTTTTGA 1113 0.3944 MPYSSNTNEFEYPNRKRKRDFMATTNNDSDFCYGYGGSSSSRYGYGGGIKENPKKTKSSKFCKECGKGFPSLKALCGHMACHSDKERGTNSNNRFQFESNSGISEKQKLVVDSNSDTETSVPVRRSKRMRFKNVSNNNNSNPFYCSSSSSVSEVEQEREEVARCLMMLSKDTSYKDQFMLFSNNNSVVLEAKLPFVDEKKKIGYDSDNSDSGYFRYGPKKKVDSDYYYDDDDEVNNNGDSRRNKNWKLESLTSEDFSALESHEFNNNSTDTDSKSHSNKKIHVNNKGNNKIKSKKKKKKKLLKSKKNKEHECPICNRMFRSGQALGGHKRSHFVGGSEENTLFIRPDATATVVPCLIDLNLPAPVEDAPF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241981g00006 370 MobiDBLite consensus disorder prediction 259 298 - -
Stsc241981g00006 370 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Stsc241981g00006 370 SUPERFAMILY beta-beta-alpha zinc fingers 61 332 IPR036236 -
Stsc241981g00006 370 Coils Coil 291 311 - -
Stsc241981g00006 370 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 31 367 - -
Stsc241981g00006 370 MobiDBLite consensus disorder prediction 280 298 - -
Stsc241981g00006 370 ProSitePatterns Zinc finger C2H2 type domain signature. 312 332 IPR013087 -
Stsc241981g00006 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 332 IPR013087 -
Stsc241981g00006 370 Pfam C2H2-type zinc finger 62 84 - -
Stsc241981g00006 370 Pfam C2H2-type zinc finger 310 332 - -
Stsc241981g00006 370 SMART c2h2final6 60 82 IPR013087 -
Stsc241981g00006 370 SMART c2h2final6 310 332 IPR013087 -
Stsc241981g00006 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241981g00006 Stsc-Chr241981 30452 31564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241981g00006 48 367 C2H2 Transcription Factor Family AT1G26610 36.385 1.59e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241981g00006 zf-C2H2_6 3.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241981g00006 - - adu:107489539 431.024