Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241977g00010 ATGGCAATTGCAGCGCCGAATTCATCTCCTACGATGAGCCTCAGTCACAGCCACAGCCACGAGGACGGGACCACGACGGCCGCGTCGACGACGAACGAGAATCTGAACGGGAACGGGAAGCAAGAGGATGACGATCACGAGCAGGACATGGTGATGCCGGGGTTCCGTTTCCACCCGACAGAAGAAGAGCTTGTGGAGTTCTACCTTCGGCGTAAGGTGGAAGGCAAACGTTTCAATGTTGAGCTCATTACTTTCCTTGATCTTTATCGCTACGACCCTTGGGAGCTTCCTGCGTTGGCAGCGATAGGGGAGAAGGAGTGGTACTTCTATGTGCCGCGAGACAGAAAATACAGGAACGGAGATCGTCCGAATCGGGTGACGACGTCGGGTTACTGGAAGGCAACCGGAGCGGATAGGATGATCCGGACGGAGAATTTCAGGTCGATCGGGTTGAAGAAAACCCTAGTTTTCTACTCAGGGAAAGCTCCAAAAGGAATCCGTACAAGTTGGATTATGAACGAGTACCGTTTGCCCCAACACGAAACTGAACGATACCAAAAGGCAATATATAATCATTCCTCTCTTTCTTTCTTAGCTTCCTTTCAAATTTTATTTTTCTTCAAAAGTAGCATCTAG 636 0.4984 MAIAAPNSSPTMSLSHSHSHEDGTTTAASTTNENLNGNGKQEDDDHEQDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAIYNHSSLSFLASFQILFFFKSSI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241977g00010 211 Gene3D NAC domain 60 198 IPR036093 GO:0003677|GO:0006355
Stsc241977g00010 211 MobiDBLite consensus disorder prediction 1 37 - -
Stsc241977g00010 211 Pfam No apical meristem (NAM) protein 53 177 IPR003441 GO:0003677|GO:0006355
Stsc241977g00010 211 MobiDBLite consensus disorder prediction 1 47 - -
Stsc241977g00010 211 ProSiteProfiles NAC domain profile. 51 192 IPR003441 GO:0003677|GO:0006355
Stsc241977g00010 211 FunFam NAC domain-containing protein 35 60 198 - -
Stsc241977g00010 211 SUPERFAMILY NAC domain 51 183 IPR036093 GO:0003677|GO:0006355
Stsc241977g00010 211 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 48 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241977g00010 Stsc-Chr241977 51820 52530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241977g00010 24 188 NAC Transcription Factor Family AT2G02450 76.374 3.42e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241977g00010 NAM 8.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241977g00010 - - gmx:100792622 342.043