Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241977g00006 ATGGAGGAAAGAGGAGGAACCATTCTGATGCAAAGGTATGAGGTGGGGCGCATGCTTGGCCAAGGAAACTTTGCTAAAGTTTATCATGCAAGGAACCTCAAGACGGGGCAGAGTGTTGCAATCAAAGTCCTTAATAAGGACATGATCACAAGGTTTGGCATGGCTGAGCAAATCAAGCGTGAAATCTCCGTGATGCGCCTCGTGAGGCACCCCAACATTGTGCATCTCTACGAGGTGATGGCAAGCAAGACCAAAATATACTGCGTCATGGAGTATGTCAAAGGTGGTGAGCTTTTTGACAAGGTGTCCCTAGGGAGGTTGAAGGAAGATCTGGCCAGAAAATATTTCCAGCAATTGATAGATGCTATTGATCTCTGCCACAGCAGAGGGGTGTATCACCGTGACCTCAAGCCGGAGAACCTTCTCTTGGACGAAAATGGCAACCTCAAGGTCACAGACTTCGGCCTGAGCGCCTTGACGGATTGCAGAAAGAGTGATGGCCTTCTTCACACAACTTGTGGAACTCCGGCTTATGTGGCGCCGGAGGTGATTAGGAAGAAAGGCTACGATGGAGCCAAGGCAGATATTTGGTCTTGTGGTGTAATTCTCTATGTTCTGTTGGCTGGATATCTTCCTTTCCGTGATAAGAATCTCATTGAAATGTATAGAAAGATTGCCAAAGCAGAATTCAAGTGCCCTCAATGGTTCCCTCTAGACGCTAAAAGGCTTCTCTACAGGATTCTTGATCCTAACCCAACAACCAGAGTTACTATCCCCAGAATCATGGAGAGTAGATGGTTCCAAAAGGGGTATGAGCACAATGTAGTATCCTATCTGCCACCTTTGTCCCCAAGATGGCGTGGTGATGAATGTATCTCTGATGTTGAGGCTGCATTTGGATTTACCTCCTCCTCCTCCTCTTCCTTCTCCTCAACAGAAGAAGAGGAAGAGGTAACCGTTCCCATGAAGCTGTATCGCTTCAATGCGTTTGATATCATAGCACTCTCCTCAGGGTTTGATCTCTCTGGATTGTTTGAGAAAGATAACAATCAGAGACAAATTGCAATGTTTATAACAAGCATGCCGCCGTTGGAAAGAAGAAATTCAAAGGGAGCCAGCCAACTCAGCATAGATACAGAGATTTTTCAAGTTACAGATTCCTTTCATGTTGTTGAGATCAACAAGGTTCTTGGGGACTCATTGGAATACAACACATTCTGGGAACACCATCTTAAGGCTTTCCTTGATGAAGTTGTTTCAGCTTGGCAAGGATGTCACCAACAGTAA 1287 0.4561 MEERGGTILMQRYEVGRMLGQGNFAKVYHARNLKTGQSVAIKVLNKDMITRFGMAEQIKREISVMRLVRHPNIVHLYEVMASKTKIYCVMEYVKGGELFDKVSLGRLKEDLARKYFQQLIDAIDLCHSRGVYHRDLKPENLLLDENGNLKVTDFGLSALTDCRKSDGLLHTTCGTPAYVAPEVIRKKGYDGAKADIWSCGVILYVLLAGYLPFRDKNLIEMYRKIAKAEFKCPQWFPLDAKRLLYRILDPNPTTRVTIPRIMESRWFQKGYEHNVVSYLPPLSPRWRGDECISDVEAAFGFTSSSSSSFSSTEEEEEVTVPMKLYRFNAFDIIALSSGFDLSGLFEKDNNQRQIAMFITSMPPLERRNSKGASQLSIDTEIFQVTDSFHVVEINKVLGDSLEYNTFWEHHLKAFLDEVVSAWQGCHQQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241977g00006 428 Pfam NAF domain 327 363 IPR004041 GO:0007165
Stsc241977g00006 428 CDD CIPK_C 328 416 - -
Stsc241977g00006 428 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Stsc241977g00006 428 Gene3D Kinase associated domain 1, KA1 326 366 - -
Stsc241977g00006 428 Gene3D Kinase associated domain 1, KA1 367 420 - -
Stsc241977g00006 428 Gene3D Transferase(Phosphotransferase) domain 1 6 325 - -
Stsc241977g00006 428 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241977g00006 428 FunFam Non-specific serine/threonine protein kinase 5 92 - -
Stsc241977g00006 428 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165
Stsc241977g00006 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Stsc241977g00006 428 CDD STKc_SnRK3 12 266 - -
Stsc241977g00006 428 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241977g00006 428 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241977g00006 428 FunFam Non-specific serine/threonine protein kinase 7 289 - -
Stsc241977g00006 428 SUPERFAMILY Protein kinase-like (PK-like) 9 314 IPR011009 -
Stsc241977g00006 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241977g00006 Stsc-Chr241977 36241 37615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241977g00006 3 424 CBL-interacting serine-threonine protein kinases AT5G45820 57.837 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc241977g00006 Pkinase 2.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241977g00006 K07198 - gmx:100807927 558.91