Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241977g00002 ATGGAACTATCGAGTCAAGAAGGAGAAATAGCAATCCCAATAAACAGCACCGCCAATTATGGCGGCAATGGCCATGGAGCCCACCACATCAACATTCACCACACTTCTCAAAACCCTTCCAATGGCACCTCTATGCACCCTCCCGACGATATCCACGCTCACGGACCCTTCAACAACAACAACACTAACAATAATAACAAGCAAGATGAAGACGACGACGACGACGTCGTGGTTCCCCTCGTCAGGTACAGAGAGTGCCTCAAGAACCATGCCGCCGCCATGGGAGGAAACGCCACCGACGGCTGTGGCGAGTTCATGCCAAGCGGCGACCACGGCACCATGGAAGCCCTCACCTGCTCCGCCTGCCACTGCCACAGAAACTTCCACAGAAAGGAAATCCAAGGGGATCCAGCCTCCTCCGCACCACCACCGCCACTGCTCGAGTACCACCACCACCACTTCAACACCGCCAGCGCCACCAGGCACCTCAGCGCTTCTAGAAAGTTCCTTCTGGCTGGAAATAACAAGAACATGCATCATCACATCCTTCCGTCAAGAACGGTGAGCCCGGCGCAGATGATAATGCCGTATAACATAGGTCCGATGCCGCCGTCGTCGGAGCAGTCGGACGAGCAGGACGAGAGGGTGAAGAAGAAGAGGTTCAGGACGAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCTGGCGTTCGCGGAGAAAGTTGGTTGGAAGATTCAGAAGCAAGAAGACTCGGTTGTTCAGCATTTCTGCAACGAGATTGGCGTGAAACGCAGAGTGCTCAAGGTTTGGATGCATAACAATAAACACAATCTCGCCAAGAAAAACCTTCTCATCATTCCCCCTTCCTCTTCTACTTAA 876 0.532 MELSSQEGEIAIPINSTANYGGNGHGAHHINIHHTSQNPSNGTSMHPPDDIHAHGPFNNNNTNNNNKQDEDDDDDVVVPLVRYRECLKNHAAAMGGNATDGCGEFMPSGDHGTMEALTCSACHCHRNFHRKEIQGDPASSAPPPPLLEYHHHHFNTASATRHLSASRKFLLAGNNKNMHHHILPSRTVSPAQMIMPYNIGPMPPSSEQSDEQDERVKKKRFRTKFSQEQKEKMLAFAEKVGWKIQKQEDSVVQHFCNEIGVKRRVLKVWMHNNKHNLAKKNLLIIPPSSST 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241977g00002 291 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 82 133 IPR006456 -
Stsc241977g00002 291 SUPERFAMILY Homeodomain-like 208 279 IPR009057 -
Stsc241977g00002 291 Gene3D - 204 280 - -
Stsc241977g00002 291 MobiDBLite consensus disorder prediction 30 45 - -
Stsc241977g00002 291 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 83 132 IPR006456 -
Stsc241977g00002 291 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 59 277 - -
Stsc241977g00002 291 NCBIfam homeobox domain, ZF-HD class 218 274 IPR006455 -
Stsc241977g00002 291 Pfam ZF-HD protein dimerisation region 81 133 IPR006456 -
Stsc241977g00002 291 MobiDBLite consensus disorder prediction 22 73 - -
Stsc241977g00002 291 FunFam Zinc-finger homeodomain protein 2 205 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241977g00002 Stsc-Chr241977 14946 15821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241977g00002 1 281 ZF-HD Transcription Factor Family AT1G14440 47.213 2.49e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc241977g00002 ZF-HD_dimer 8.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241977g00002 - - aip:107619596 336.65