Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241976g00008 ATGCATATGAGAGGTTTGTTTCCAGCGTTTGGACAGTTGCATAATACCCCTCCTCCTCCTCCTCCTACTCAGCCACCTCTTCGCCCCACTCTTCCTTCTTCTCCTCTCCACCACCATCAGCCATTTCAGAGGCAGCAAACACCAAATCCAGTGTCTGTTACTGCTCTGCCACAACAACCACCGGGAATTCGCCCCCGAGTGCGAGCAAGAAGAGGCCAAGCCACTGATCCTCACAGTATTGCTGAAAGGTTACGTCGTGAGAGAATTGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAACAAGACGGACAGAGCAGCCATGCTTGATGAAATTGTGGATTATGTCAAGTTTCTAAGGCTCCAAGTTAAGGTTTTGAGCATGAGTAGGCTAGGTGGTGCTGGCGCTGTTGCCCAGCTCGTAGCTGATGTTCCTCTGTCTGGAGTCGAGCAGGGTGAGGAAGTAGAAGGAGGAGGGAAGAATGAAGAAGCTTGGGAGAAATGGTCAAATGATGGAACAGAGCAACAAGTAGCAAAATTGATGGAAGAAGACGTTGGAGCAGCCATGCAATTTCTTCAGTCCAAGGCACTTTGCATTATGCCTATTTCTCTTGCCTCTGCCATCTTCCGTATGCCTCCCTCATCTGACCCATCTTCACTCATCAAGCCTGAATCAAACACCCATTCATAG 699 0.4893 MHMRGLFPAFGQLHNTPPPPPPTQPPLRPTLPSSPLHHHQPFQRQQTPNPVSVTALPQQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSGVEQGEEVEGGGKNEEAWEKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPPSSDPSSLIKPESNTHS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241976g00008 232 Gene3D - 68 130 IPR036638 GO:0046983
Stsc241976g00008 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 132 IPR036638 GO:0046983
Stsc241976g00008 232 MobiDBLite consensus disorder prediction 13 32 - -
Stsc241976g00008 232 MobiDBLite consensus disorder prediction 36 53 - -
Stsc241976g00008 232 SMART finulus 79 128 IPR011598 GO:0046983
Stsc241976g00008 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Stsc241976g00008 232 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 209 - -
Stsc241976g00008 232 MobiDBLite consensus disorder prediction 1 78 - -
Stsc241976g00008 232 FunFam Basic helix-loop-helix transcription factor 68 130 - -
Stsc241976g00008 232 Pfam Helix-loop-helix DNA-binding domain 78 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241976g00008 Stsc-Chr241976 33072 39788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241976g00008 35 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.821 4.04e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241976g00008 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241976g00008 - - gmx:100807570 308.531