Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241976g00007 ATGGCTGGTAATAGTAATAACAATAATCATAATGGGTCGGAGGGTTTGGGAGACGATTTCTTCGAGCAGATCTTGGCGGTGCCAACGGAGTATGGCGGCGGCGGTGGTGGTAGAACATTAGTGGGGTCCATGCCGCCAATGGTGCTTCAGTTGGGATCCACGGTAGGAAGCGGTGTTCCTGTGGATGGGTTAAGAATGGGGATGATGCCTTTGGGTTTGAACTTAGAGCAAACTGGTTTCCTTAGACGCTTTCCTGAACAAGTTTCTGATGTTGAAGCCGCCATTAACAACCAACAACAGCAATACCTTCGTCTTAGTAATAACAATAATAATAATAATAGTAGTAGCTCTTCATCTTCCTCTTCTCCTGCTGGAATCACTGATCGAGATTCGATGCATATGAGAGGTTTGTTTCCAGCGTTTGGACAGTTGCATAATACCCCTCCTCCTCCTCCTCCTACTCAGCCACCTCTTCGCCCCACTCTTCCTTCTTCTCCTCTCCACCACCATCAGCCATTTCAGAGGCAGCAAACACCAAATCCAGTGTCTGTTACTGCTCTGCCACAACAACCACCGGGAATTCGCCCCCGAGTGCGAGCAAGAAGAGGCCAAGCCACTGATCCTCACAGTATTGCTGAAAGGTTACGTCGTGAGAGAATTGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAACAAGACGGACAGAGCAGCCATGCTTGATGAAATTGTGGATTATGTCAAGTTTCTAAGGCTCCAAGTTAAGGTTTTGAGCATGAGTAGGCTAGGTGGTGCTGGCGCTGTTGCCCAGCTCGTAGCTGATGTTCCTCTGTCTGGAGTCGAGCAGGGTGAGGAAGTAGAAGGAGGAGGGAAGAATGAAGAAGCTTGGGAGAAATGGTCAAATGATGGAACAGAGCAACAAGTAGCAAAATTGATGGAAGAAGACGTTGGAGCAGCCATGCAATTTCTTCAGTCCAAGGCACTTTGCATTATGCCTATTTCTCTTGCCTCTGCCATCTTCCGTATGCCTCCCTCATCTGACCCATCTTCACTCATCAAGCCTGAATCAAACACCCATTCATAG 1092 0.4789 MAGNSNNNNHNGSEGLGDDFFEQILAVPTEYGGGGGGRTLVGSMPPMVLQLGSTVGSGVPVDGLRMGMMPLGLNLEQTGFLRRFPEQVSDVEAAINNQQQQYLRLSNNNNNNNSSSSSSSSSPAGITDRDSMHMRGLFPAFGQLHNTPPPPPPTQPPLRPTLPSSPLHHHQPFQRQQTPNPVSVTALPQQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSGVEQGEEVEGGGKNEEAWEKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPPSSDPSSLIKPESNTHS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241976g00007 363 MobiDBLite consensus disorder prediction 167 184 - -
Stsc241976g00007 363 MobiDBLite consensus disorder prediction 144 163 - -
Stsc241976g00007 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Stsc241976g00007 363 Pfam Helix-loop-helix DNA-binding domain 209 253 IPR011598 GO:0046983
Stsc241976g00007 363 FunFam Basic helix-loop-helix transcription factor 199 261 - -
Stsc241976g00007 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 263 IPR036638 GO:0046983
Stsc241976g00007 363 Coils Coil 88 108 - -
Stsc241976g00007 363 Gene3D - 199 261 IPR036638 GO:0046983
Stsc241976g00007 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 340 - -
Stsc241976g00007 363 MobiDBLite consensus disorder prediction 105 208 - -
Stsc241976g00007 363 SMART finulus 210 259 IPR011598 GO:0046983
Stsc241976g00007 363 MobiDBLite consensus disorder prediction 105 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241976g00007 Stsc-Chr241976 31797 39791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241976g00007 166 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.821 6.82e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241976g00007 HLH 3.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241976g00007 - - lang:109355094 379.793