Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241976g00002 ATGGATAGGGTCTTCTCAGTCGACGAAATCCCTGACCACTTCTGGTCCTCCATCACCCCCGACCACCCGCCTCCCTCCAACTCCAACTCCAACATCAACCGCAGCCCTTCCGAGTGGGCCTTCCAACGCTTCCTCCAAGAAGCTGCACCTCCCTCTCCCACTCACCAAAACGACGCCGTTTTCTTCATCCACGACGACCATCATACCCTTCCTCATCCCACTAAGCCCGATCCAAACGACTCCGTTTCTGTTCCCAAGAACGACGCCGTTTTGACCAATGCCCCTCCTCCTCCTCCTACGACGGCAACCACGACGAACAAAACGGCTGCTTCATCTTCCCTCGGCGTTGATTCCGATGACTACCAGGCTCTCCTTAAAAGCAAGCTCAATCTTGCATGTGCCGCTGTCGCCATGACTAGGGCAGCATCTTTGTCTAAGTCTCAAGATCCAGCCACTTTTGCGGATAGTGGATCATCTAATACATCTCAAGTTGGACCTCAGCCTTCTTTAAAAGGATCTGGTACTTCTGGAAATGACCCACCTAAAATACAAGACAAAGATGCCAAAGCACCAATTGGGATACCTTCCATACCTGCCATACAAAAGAAACCTGCTGTTACAGTTACAGCCAGGCCATCAACAAGTGGATCGTCAAGGGAACAGTCTGATGATGAGGAAGCTGAGGGAGAGACAGATCTGAATGATAACATGGACCCTGCTGACGTAAAACGAGTAAGAAGGATGCTTTCTAATAGGGAGTCTGCCAGACGTTCAAGAAGAAGAAAACAAGCTCATTTAAATGAGTTGGAGACACAGGTTTCTCAATTAAGAGGTGAAAATTCTTCCTTGCTAAAGCGCCTTACTGATGTAAGCCATAAGTACAATGAATCTGCTGTTGACAACAGAGTATTAAAAGCTGATGTTGAAACGTTAAGAGCAAAGGTGAAGATGGCGGAAGAAACCGTCAAAAGAATTACAGGGTTGAACCCAGTAATGCATGCCATGTCTGATTTAACATCAATGGGCATGCCTACATTTGACGGTAGCCCTCCTGACACATCGGCCGATGCAGCTGTCCCCGTGAGAGACGATACTCACCATCACCACCACTTCTTTCAACAAACATCAAGTAATCATCATATGCCGAGTCATGATCTTAGGGTAAACAATGGGTTGGGAGACATATCTGCAATCGAGAGTGTGCCGCAGAATGCCGCGGCTGCGGTGGTTGGGAATAAGATGGGTCAAACAGCTTCCTTGCAGCGGGTGGCAAGCTTGGAACACCTTCAAAAGAGGATTAGGGGTGGTGTGGATTCATGTGGCGGACCTTCTAATAATCATGAGCACTAA 1350 0.4837 MDRVFSVDEIPDHFWSSITPDHPPPSNSNSNINRSPSEWAFQRFLQEAAPPSPTHQNDAVFFIHDDHHTLPHPTKPDPNDSVSVPKNDAVLTNAPPPPPTTATTTNKTAASSSLGVDSDDYQALLKSKLNLACAAVAMTRAASLSKSQDPATFADSGSSNTSQVGPQPSLKGSGTSGNDPPKIQDKDAKAPIGIPSIPAIQKKPAVTVTARPSTSGSSREQSDDEEAEGETDLNDNMDPADVKRVRRMLSNRESARRSRRRKQAHLNELETQVSQLRGENSSLLKRLTDVSHKYNESAVDNRVLKADVETLRAKVKMAEETVKRITGLNPVMHAMSDLTSMGMPTFDGSPPDTSADAAVPVRDDTHHHHHFFQQTSSNHHMPSHDLRVNNGLGDISAIESVPQNAAAAVVGNKMGQTASLQRVASLEHLQKRIRGGVDSCGGPSNNHEH 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241976g00002 449 SUPERFAMILY Leucine zipper domain 243 293 IPR046347 GO:0003700|GO:0006355
Stsc241976g00002 449 MobiDBLite consensus disorder prediction 20 38 - -
Stsc241976g00002 449 MobiDBLite consensus disorder prediction 143 268 - -
Stsc241976g00002 449 PANTHER BASIC LEUCINE ZIPPER 63 1 438 - -
Stsc241976g00002 449 SMART brlzneu 239 303 IPR004827 GO:0003700|GO:0006355
Stsc241976g00002 449 MobiDBLite consensus disorder prediction 66 114 - -
Stsc241976g00002 449 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 241 296 IPR004827 GO:0003700|GO:0006355
Stsc241976g00002 449 Pfam Basic leucine-zipper C terminal 310 437 IPR020983 -
Stsc241976g00002 449 MobiDBLite consensus disorder prediction 143 180 - -
Stsc241976g00002 449 MobiDBLite consensus disorder prediction 13 38 - -
Stsc241976g00002 449 MobiDBLite consensus disorder prediction 236 252 - -
Stsc241976g00002 449 FunFam BZIP transcription factor 241 292 - -
Stsc241976g00002 449 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 246 261 IPR004827 GO:0003700|GO:0006355
Stsc241976g00002 449 Pfam bZIP transcription factor 242 294 IPR004827 GO:0003700|GO:0006355
Stsc241976g00002 449 CDD bZIP_plant_GBF1 244 295 IPR045314 GO:0003700|GO:0006355
Stsc241976g00002 449 Coils Coil 301 321 - -
Stsc241976g00002 449 Coils Coil 252 286 - -
Stsc241976g00002 449 Gene3D - 242 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241976g00002 Stsc-Chr241976 10577 15024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241976g00002 1 336 bZIP Transcription Factor Family AT4G02640 40.922 1.19e-49 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc241976g00002 bZIP_C 3.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241976g00002 K25784 - gmx:100170702 499.975