Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241974g00009 ATGGCTTCATTCCAAAACGTCAACTTTGATACCCAAATTATTCCATCAGAGATCCTTGTATCTCAAATCATGCAACTTCATGCAAGCATCTCCAAGTTAGAATCCCTTAGACCTTCAAAACAAGTCAATAGCCTCTTCACTAACCTAGTGAAACTTTGCATCCTCCCTTCATCCATTGAGATTGAATCTTTACCCCAAGATGTGAAGATCGCGCGCAAGAGCCTCATCGAACTCTGCGGCCGCGCCGAAGGGCTCATGGAGCTTGAGTTCTCAACTTTCATAAGCCACACACCAAACCCCATGAAAAACCTCATACTCTTCCCTTACTATGGCAACTATGTGAAGCTAGCAAGCATGGAGAACAAGATCCTCAAGGATAATGGGGTGGCACATCCAAAGAAGGTAGCCTTTGTTGGATCCGGACCATTGCCACTTACTTCCATCATGATGGCCACACACCACATGGAATCGACACACTTCGACAACTTCGACGTCGACGAGAAGGCGAACGAGGTGGCTAGGAAGATTGTGGCCTCAGATTCATGTCTTGAGAAGAGGATGAAGTTTGAAACCCATGACATCATGGATGTGAAAGAGAGGTTGAGGGAATATGATTGCATATTCTTGGCAGCACTCGTTGGAATGTCAAGAGAAGCAAAACTCAAGATTTTGGGACATATTAGGAAGTATATGAAGGAAGGTGGTTTCTTGCTTGTGAGAAGTGCAAAGGGTGCTAGGGCTTTCTTGTACCCTATTGTGGAAGAACGTGACGTGGTGGATTTTGAGGTTCTTACTATATTTCATCCCACAAATGATGTTATCAACTCGGTTGTTCTTCTTCGCAAGCCTATAGCTTAA 858 0.4441 MASFQNVNFDTQIIPSEILVSQIMQLHASISKLESLRPSKQVNSLFTNLVKLCILPSSIEIESLPQDVKIARKSLIELCGRAEGLMELEFSTFISHTPNPMKNLILFPYYGNYVKLASMENKILKDNGVAHPKKVAFVGSGPLPLTSIMMATHHMESTHFDNFDVDEKANEVARKIVASDSCLEKRMKFETHDIMDVKERLREYDCIFLAALVGMSREAKLKILGHIRKYMKEGGFLLVRSAKGARAFLYPIVEERDVVDFEVLTIFHPTNDVINSVVLLRKPIA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241974g00009 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 11 285 IPR004298 GO:0030410|GO:0030418
Stsc241974g00009 285 Pfam Nicotianamine synthase protein 16 283 IPR004298 GO:0030410|GO:0030418
Stsc241974g00009 285 CDD AdoMet_MTases 163 239 - -
Stsc241974g00009 285 Gene3D Vaccinia Virus protein VP39 16 283 IPR029063 -
Stsc241974g00009 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 241 IPR029063 -
Stsc241974g00009 285 PANTHER NICOTIANAMINE SYNTHASE 3 16 283 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241974g00009 Stsc-Chr241974 39224 40595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241974g00009 16 282 Nicotianamine Synthase Gene Family AT5G56080 50.185 1.29e-89 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241974g00009 K05953 - gmx:100819726 465.307