Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241974g00002 ATGGCGAAAAAGTATGAAGGGCATGCAGTGGGAATTGACCTTGGTACGACATACTCTTGTGTTGCCGTATGGCAGGAGCAACATTGTCGCGTGGAGATCATTCATAATGATCAGGGCAGCAAAACAACACCTTCCTGCGTTGCTTTTACTCACAATCAAAAGTTTGTTGGAGATGCTGCTCACAACCAGGCTGCCGCTAACCCAACTAACACTGTCTTTGATGCTAAGAGATTGATCGGTAGAAAATATAGTGATCCGATTGTCAAGAATGATATCCTGATGTGGCCATTTAAGGTCACTGCCGACACTGATGATAAACCAATGATTGTTGTTACATACAAGGATGAAGAGAAGCAGATTTCTGCTGAAGAAATCTCATCTATGGTTCTCACTAAGATGCGCCAGATTGCGAAGGCATACTTAGAGGCACCTGTTCGTAAAGCATGA 447 0.4362 MAKKYEGHAVGIDLGTTYSCVAVWQEQHCRVEIIHNDQGSKTTPSCVAFTHNQKFVGDAAHNQAAANPTNTVFDAKRLIGRKYSDPIVKNDILMWPFKVTADTDDKPMIVVTYKDEEKQISAEEISSMVLTKMRQIAKAYLEAPVRKA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241974g00002 148 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc241974g00002 148 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc241974g00002 148 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc241974g00002 148 SUPERFAMILY Actin-like ATPase domain 9 147 IPR043129 -
Stsc241974g00002 148 Gene3D - 73 124 - -
Stsc241974g00002 148 PANTHER HEAT SHOCK PROTEIN 70KDA 9 143 IPR013126 GO:0005524|GO:0140662
Stsc241974g00002 148 Pfam Hsp70 protein 9 148 IPR013126 GO:0005524|GO:0140662
Stsc241974g00002 148 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc241974g00002 148 Gene3D - 5 148 - -
Stsc241974g00002 148 FunFam heat shock 70 kDa protein-like 73 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241974g00002 Stsc-Chr241974 2036 2599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241974g00002 1 148 Calmodulin-binding Proteins AT3G12580 68.919 1.01e-66 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241974g00002 K03283 - vum:124829379 234.572