Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241974g00001 ATGGGTCTCTCATCTTATAAACTCCTCACTTCTCTTTGTTTCATTCAATGTGGGACTAACTTTAGTGCCCACTCACACTTGAACCACAACACTTTCGATGTTTCTCTCCTTACTATTAAGGGCAAGGTCTTCAAAGTTAAGGCCACTGCCGGAAACACTCACCTCGGTGGAGCGGATTTTGATATCAGAGTATTGAGTTACTTTGTTAAGGAATTCGAGAGAAAGAACAAGGTTTACATTAGTGGCAATGCCAGAGCCTTAAGGAGACTGAGAATTGCTTGTGAGAAGGCCAAGAGGACCTTATCTTATGCAGTAACAGCCTCCATTGATTTAGATGCTTTCCTTAACGGAATTGACTTCTATTCATCAATCATGTGTGCTAGATTCGAAGAACTTAACATGGACCTCTTTAGAGAGTGCGTAGAAACCATAGATCAATGCCTGACTGATGCGAAAATGGACAAGGCGAGTGTACACGATGTGGTGCTTATTGGTGGCTCTTCAAGGATTCCTAAAGTACAGGAGTTATTGCAAGAAATTTTCAAAGGGAAGGAGCTTTGTAAGAGCATCAATCCTGACGAAGCAGTTGCTTATGGTGCAGCTATTAAAGCTGCTTTGTTGAATGCAGGCACTAAAAGTAATGTCCCAGATTTGGTGCTGCAGGATGTTACTCCTCTGTCTCTTGATCACCAAGTGGCAATGAGGCAAAATATTTATGAAGGTGAGAGGACAAGAGCCAGCAATAACAACTTGCTCGGTACATATAAATTTTCCGGCATCCCTCCTACCCCTAAAGGAAGACAGTCAGGGGAAGAAATCGAAAGGCTCGTTAAGGAAGCTGCGAGACACAAGGTTGAAGATGACAAGTTTCTGAAGAAAGCTAAAGCAATCAATGCTTTGGATGATTATGTCTATGACATGGAGAAAACATTAAACCTAAACGGTTCTGAGCTTTGCCCTGAGGATAAGAAGAAGCTGAATTCTATAATTGATAAGGCTAGAAATTTGCTTGATGATGGTAACAAGGAGAAAACAAAAAATGATGTGTTCGTGGAGCATCTTAAAGAAGCTAAGCTCATTTTTTAG 1086 0.4116 MGLSSYKLLTSLCFIQCGTNFSAHSHLNHNTFDVSLLTIKGKVFKVKATAGNTHLGGADFDIRVLSYFVKEFERKNKVYISGNARALRRLRIACEKAKRTLSYAVTASIDLDAFLNGIDFYSSIMCARFEELNMDLFRECVETIDQCLTDAKMDKASVHDVVLIGGSSRIPKVQELLQEIFKGKELCKSINPDEAVAYGAAIKAALLNAGTKSNVPDLVLQDVTPLSLDHQVAMRQNIYEGERTRASNNNLLGTYKFSGIPPTPKGRQSGEEIERLVKEAARHKVEDDKFLKKAKAINALDDYVYDMEKTLNLNGSELCPEDKKKLNSIIDKARNLLDDGNKEKTKNDVFVEHLKEAKLIF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241974g00001 361 ProSitePatterns Heat shock hsp70 proteins family signature 3. 161 175 IPR018181 -
Stsc241974g00001 361 Gene3D - 188 205 - -
Stsc241974g00001 361 Pfam Hsp70 protein 268 348 IPR013126 GO:0005524|GO:0140662
Stsc241974g00001 361 Pfam Hsp70 protein 27 229 IPR013126 GO:0005524|GO:0140662
Stsc241974g00001 361 SUPERFAMILY Actin-like ATPase domain 29 207 IPR043129 -
Stsc241974g00001 361 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 228 269 IPR029047 -
Stsc241974g00001 361 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 296 355 IPR029048 -
Stsc241974g00001 361 PRINTS 70kDa heat shock protein signature 30 40 - -
Stsc241974g00001 361 PRINTS 70kDa heat shock protein signature 217 236 - -
Stsc241974g00001 361 PRINTS 70kDa heat shock protein signature 158 174 - -
Stsc241974g00001 361 PRINTS 70kDa heat shock protein signature 190 210 - -
Stsc241974g00001 361 Coils Coil 323 343 - -
Stsc241974g00001 361 Gene3D Actin; Chain A, domain 4 57 139 - -
Stsc241974g00001 361 Gene3D - 29 187 - -
Stsc241974g00001 361 Gene3D - 270 361 IPR029048 -
Stsc241974g00001 361 PANTHER HEAT SHOCK PROTEIN 70KDA 27 330 IPR013126 GO:0005524|GO:0140662
Stsc241974g00001 361 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 214 301 IPR029047 -
Stsc241974g00001 361 FunFam Heat shock 70 kDa 56 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241974g00001 Stsc-Chr241974 714 1993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241974g00001 27 356 Calmodulin-binding Proteins AT3G12580 48.878 7.01e-120 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241974g00001 K03283 - gmx:102667572 378.637