LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241972g00005	ATGCTCCGAAAATTGTTCTTTCGAAAACCTCCTGATGGCCTTCTCGAGATCTGTGAACGAGTCTATGTATTTGATTGCTGCTTCACCACTGATGCTTGGAGCGAAGAGAATTACAAAGTTTACATTGATGGAATAGTTGGTCATCTTAAGGAGAATGTGCCCGATGCTTCAATTCTTGTTTTCAATTTTCGCGAGGAAGAGACGAAGAGCGTCATGGCAAACATATTATCTGAGTATGACATTACTATTATGGACTATCCGCGCCACTATGAGGGTTGCCCTGTGCTCAAGATGGAGCTCATTCACCATTTCTTAAGGTCTGGCGAGAGTTGGCTTTCTCTTGGGCAGCACAATGTGCTTTTGATGCATTGTGAACGCGGTGGTTGGCCTGTTTTGGCCTTCATGCTAGCTGCATTATTGATTTATCGGAAGCTTTACACCGGGGAGCAACGGACTTTGGATATGGTGTATAAGCAGTCTCCCCGGGAGCTTTTGCATTTGCTGACACCCTTGAATCCAATCCCTTCGCAGCTGAGGTATCTTCAGTATGTTTCCAGAAGGAATGTGGCCATAGATTGGCCACCGTTGGATAGGGCGCTTATGTTGGACTGCATTATCCTTAGATTCATCCCAAATTTCGATGGACAAGGTGGTTGTCATCCCTTGTTTAGAATCTTTGGACAGGACCCTTCTAGTGGAGACAAGAATCCGAAAATGTTGTACTCAACTCCCAAGAGAAGCAAGAATATCCGGTCTTACAAGCAGGGAGAGAGTGAACTAGTTAAGATTGATATCAGTTGCCATATTCAAGGTGATGTCGTGATTGAGGGCATTAACTTGGACCGTGATATGGAGCAAGAAATGATGATGTTCCGAGTAATGTTCAACACGGCTTTTGTTAGATCTAATATTATGATGCTTAACCGGGATGAAGTTGACATTTTATGGGATGCTAAAGATCAATTTCCAAAGGATTTCAGAGCTGAGATCCTTTTCTCCGAAATTGATGCTGCTGCAGCTGTTATGTTGGATCGCACCTCATGCTTCGAGGAGAAGGAAGGACTGCCAGTGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAACTATGTGGACTGGTTGGACCCTGATGCAGATGCTGCACTAAATGTTCTCCAACAGATGACTGCTTCGGCTATCATTAACGACAAGTTGGATACAGTTTCTGATCGGCATGGAGAGAAGGGCACTTTACAACTTAAAATGCCTCGGGGGAAAATGAATGAAGCAATAGAGTATTCTCCAAGTAAGCAATCCCCGGACAATGAGAAGAGTAGAAAAGGAGATATGGCCAGCAAAGTTGATGCTATTCCACAGGCATCTGATGTTTCCTGCTTGCCTGGTTCTGTGGATGCTTCCTTTTCCCCAGAAACACCTCCTCTACGGCATGCCTCAAATAGATTTGGCAAAGGATTTCATGATTCTCCTCCCCATACTGAAGTCAGTCATCAACCTGTTATTGATGAAACTGAAGCCCAATTGCAAGATAGAAGTCAGTCATCTATTTCTAGGTTTGCACCTGGGAGTCAATCTTCATCTACCTCTTGTAGTAAGTCCCCAACTGATACCATCACTCAGACTTCAAAGTCAGGTACTACTTCAGTTCAACCACCCCCGCCTGCACTTTCTCCCAGAACACCGTTGAAGGAAATTCGACCTGTAAAAGCAAGACCTGAGTCATCCTCTTCAAAACCGCCTACACCTCCTCCTCCTCCTACTCCTCCTCCAAAGGATCATAAACCAGCTTCAGTTAAACCTCCTCCACCTCCACCACCTCCTTCAAAGAATGAACCAGATGTTAGAGACGGACCCTCTGCTCCTCCACCACCTCCCTTAAACGAAGAGCCACAGGTGAAAGCTGCACCCCCTCCTCCTCCTCCTCCACCTCTTGCAAAGGATGATTCACAGGTTAGGGCTAGACCCCCTCCACCACCACCACCTCCTCCTTGTCTCTCTGGCAAAGCTGAAGGTCCTAGTACAGCATCAACAGCGCCGCCACCACCACCGCCGCCACCATCTGCAACACCTACCTCCAATATAGGTAATCCTTCTGTCCCAGCTGCTCCTCCACCTCCCTCTGCACCAGCTGCTCCACCAGCTCCTTCTCCCTTAGGCAAAGCGGGCATAAAATCAGACCAAGGTTTTCCAGGATCTCTTTCTGCAGTTGGTGATGGATCTAGCTCACAGGGACGGATGCTATCACGTACTATTAATTCAAAGAATAATGCCAAAAAGCTGAAGCCATTGCATTGGTTGAAACTATCTAGGGCTGTGCAAGGAAGTTTGTGGGCTGAGACAGAGAAATCGGGTGAAGCTTCCAAAGCCCCAGAGATTGACATGTCAGAGCTTGAAAGTCTCTTCTCAGCAGCAGTCCCAAGTTCAGGCTCAACCAAGAAATCAAATGCCCAAAGCTCAGCTGCGCCTAAATCTGATAAAGTGCAACTGATTGAGCATAGGCGAGCATACAATTGTGAAATCATGCTTTCAAAAGTGAAGGTGCCACTGCATGATTTAATGAGCTCAGTGCTAAAACTGGAAGAATCAGCACTAGACATTGATCAGGTTGAGAATATCATAAAGTTTTGTCCTACAAAAGAAGAGATGGAACTACTTAAGGGTTATACAGGCGAAAAGGAGAAGTTAGGGAGGTGTGAACAGTTCTTCCTAGAGTTGATGCAAGTACCACGGGTAGAATCCAAGCTCAGAGTTTTTGCATTTAAGATTCAGTTCCAAAGTCAGGTTGCTGACCTTAGAAAAAACTTGAATGTTGTGAATGCTGCAGCAGATGAGATCAAAAGCTCGGTCAAATTTAAGAGAGTTATGCAAACCATACTTTCCCTGGGCAATGCTTTGAACCAGGGAACTGCCAGGGGCTCGGCCATTGGATTCAGATTGGATAGTCTTCTGAAGCTTACTGAAACACGTGCACGGAACAACAAGATGACTCTCATGCATTATCTTTGCAAGGTTCTCGCTGACAAACTACCAGATGTTTTAGACTTCTCCAAGGATCTTGCCAACCTAGAGCCAGCAGCAAAGATCCAATTGAAGATTCTGGCAGAGGAGATGCAGGCTATAAGCAAAGGATTAGAGAAAGTTGTGCAGGAATTATCAATGTCTGAAAATGATGGTCCGATGTCAGAAACTTTCCGCAAGAATTTGAAAGAGTTCCTCTCTCATGCTGAAGCCGAAGTCCGTTCATTGGCTTCATTATATTCTCGTGTGGGCAGGAATGTTGACACATTGATTCTTTATTTTGGGGAAGATCCATCAAGGTGCCCTTTTGAGCAAGTTGTCACGACTTTGCACAACTTCACTGGAATGTTCAACAAATCACATGAAGAAAACAGCAAGCAGCTAGAGCTTGAAATGAAGAAAACAGCCGACGGTGAGAAAAAGAAGTGCGAACGAGAAAAGATAATACTGGCAGCAATCCGGACCGGCAACGTCCAATGA	3492	0.4536	MLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWSEENYKVYIDGIVGHLKENVPDASILVFNFREEETKSVMANILSEYDITIMDYPRHYEGCPVLKMELIHHFLRSGESWLSLGQHNVLLMHCERGGWPVLAFMLAALLIYRKLYTGEQRTLDMVYKQSPRELLHLLTPLNPIPSQLRYLQYVSRRNVAIDWPPLDRALMLDCIILRFIPNFDGQGGCHPLFRIFGQDPSSGDKNPKMLYSTPKRSKNIRSYKQGESELVKIDISCHIQGDVVIEGINLDRDMEQEMMMFRVMFNTAFVRSNIMMLNRDEVDILWDAKDQFPKDFRAEILFSEIDAAAAVMLDRTSCFEEKEGLPVEAFAKVQEIFNYVDWLDPDADAALNVLQQMTASAIINDKLDTVSDRHGEKGTLQLKMPRGKMNEAIEYSPSKQSPDNEKSRKGDMASKVDAIPQASDVSCLPGSVDASFSPETPPLRHASNRFGKGFHDSPPHTEVSHQPVIDETEAQLQDRSQSSISRFAPGSQSSSTSCSKSPTDTITQTSKSGTTSVQPPPPALSPRTPLKEIRPVKARPESSSSKPPTPPPPPTPPPKDHKPASVKPPPPPPPPSKNEPDVRDGPSAPPPPPLNEEPQVKAAPPPPPPPPLAKDDSQVRARPPPPPPPPPCLSGKAEGPSTASTAPPPPPPPPSATPTSNIGNPSVPAAPPPPSAPAAPPAPSPLGKAGIKSDQGFPGSLSAVGDGSSSQGRMLSRTINSKNNAKKLKPLHWLKLSRAVQGSLWAETEKSGEASKAPEIDMSELESLFSAAVPSSGSTKKSNAQSSAAPKSDKVQLIEHRRAYNCEIMLSKVKVPLHDLMSSVLKLEESALDIDQVENIIKFCPTKEEMELLKGYTGEKEKLGRCEQFFLELMQVPRVESKLRVFAFKIQFQSQVADLRKNLNVVNAAADEIKSSVKFKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLADKLPDVLDFSKDLANLEPAAKIQLKILAEEMQAISKGLEKVVQELSMSENDGPMSETFRKNLKEFLSHAEAEVRSLASLYSRVGRNVDTLILYFGEDPSRCPFEQVVTTLHNFTGMFNKSHEENSKQLELEMKKTADGEKKKCEREKIILAAIRTGNVQ	1163

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241972g00005	1163	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	761	1138	-	-
	Stsc241972g00005	1163	MobiDBLite	consensus disorder prediction	673	714	-	-
	Stsc241972g00005	1163	MobiDBLite	consensus disorder prediction	801	822	-	-
	Stsc241972g00005	1163	ProSiteProfiles	C2 tensin-type domain profile.	197	335	IPR014020	-
	Stsc241972g00005	1163	Pfam	C2 domain of PTEN tumour-suppressor protein	198	334	IPR014020	-
	Stsc241972g00005	1163	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	199	335	IPR035892	-
	Stsc241972g00005	1163	Gene3D	-	197	337	-	-
	Stsc241972g00005	1163	MobiDBLite	consensus disorder prediction	801	824	-	-
	Stsc241972g00005	1163	MobiDBLite	consensus disorder prediction	498	548	-	-
	Stsc241972g00005	1163	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	10	185	IPR029021	-
	Stsc241972g00005	1163	Gene3D	Formin, FH2 domain	746	1132	IPR042201	-
	Stsc241972g00005	1163	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	748	1147	IPR015425	-
	Stsc241972g00005	1163	SMART	PTEN_C2_2	195	334	IPR014020	-
	Stsc241972g00005	1163	MobiDBLite	consensus disorder prediction	402	744	-	-
	Stsc241972g00005	1163	Pfam	Formin Homology 2 Domain	752	1121	IPR015425	-
	Stsc241972g00005	1163	Gene3D	Protein tyrosine phosphatase superfamily	13	196	IPR029021	-
	Stsc241972g00005	1163	SMART	it6_source	748	1163	IPR015425	-
	Stsc241972g00005	1163	MobiDBLite	consensus disorder prediction	574	665	-	-
	Stsc241972g00005	1163	PANTHER	FORMIN-J	2	642	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241972g00005	Stsc-Chr241972	33531	40708	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241972g00005	1	398	Protein tyrosine phosphatase (PTP) family	AT5G58160	67.168	0.0	608

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241972g00005	-		-	ahf:112723424	1860.11