Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241972g00001 ATGAATAGTCTTGCTGGCAAAGTTCCACTTTTGAGGAACAAACACCTCCAAATTCTTGACCTTTCAAACAACACCTTGAGTGGAACAATCCCTTTGTCTGTCTTAGGGAAACTGCCATTCATGGAGAGATACAACTTCTCTTACAATAACTTAACACTGTGTGCTTCAGACATTCACCCTGATGTGCTTGAATCAGCATTCTTTGGATCAGTTAACAGCTGTCCAATTGCTGCAGACCCTCATTTCTTTAGGAGGAAGAACAATGGACACAACAAGGGAATGGAGCTAGCATTGGTGTTAACCTTCTCAATGATCTTCATGCTTGCTGGCCTCTTGTTCTTAGCATTTGGCTGTCGAAGGAAATCGAAAATGTGGCAAGTTAAACAAACTTCATACAAAGAAGAGCAGAACATTTCAGGGCCTTTCTCATTCCAGACTGATTCAACAACCTGGGTGGCTGATGTTAAGCAGGCAACATCAGTGCCAGTGGTAATCTTTGAGAAGCCTTTGTTGAACATTACATTTGCAGACTTATTGGCTGCAACATCAAATTTCGACCGAGGTACTCTTTTGGCTGAAGGAAAATTCGGTCCGGTCTATAGTGGATTTCTTCCTGGCGGCATTCATGTGGCAGTTAAAGTTTTGGTGGTTGGTTCAACATTGACAGATCAAGAAGCTGCAAGAGAGCTTGAGTTTCTAGGCCGAATCAAGCATCCTAATCTTGTTCCTTTAACTGGATATTGTGTAGCTGGGGATCAAAGGATTGCTATATATGATTATATGGAGAATGGAAACTTGCAAAATCTGCTATATGACTTGCCACTTGGTGTGCAAAGCACTGATGATTGGAGCACAGATACATGGGATGAATCTGACAACAATGGAATTCAGAATGCTGGCTCTGAAGGATTGCTCACAACTTGGAGATTTCGCCACAAAATAGCCCTTGGAACTGCTCGAGCACTCGCATTCTTGCATCATGGATGCTCTCCTCCAATCATTCACAGAGCAGTTAAGGCCAGCAGTGTTTATCTGGACTATGACCTCGAGCCGAGGCTGTCTGATTTCGGCCTGGCTAAGATCTTTGGAAGTGGCTTGGACGAGGAGATTGCTCTTGGCTCACCCGGTTATGTTCCTCCAGAGTTTTCTCAACAAGAATTCGACTCGCCAACTACGAAATCTGATGTGTATTGCTATGGAGTTGTGCTTTTTGAGCTAGTAACCGGAAAGAAGCCGGTAGGAGAGGATTACCCTGATGATAAGGAATCAACTTTGGTTAGCTGGGTAAGAGGACTAGTTAAAAAGAATCAAGCTTCAAGGGCAATTGATCCAAAGATTAGGGACACAGGACTAGATGAACAAATGGAGGAGGCTCTCAAGATTGGTTATCTTTGCACTGCTGACTTGCCGGCCAAGCGACCGACAATGCAGCAGATTGTTGGACTTCTAAAAGACATTGAACCTGTTTCTTCTAATTAG 1479 0.4354 MNSLAGKVPLLRNKHLQILDLSNNTLSGTIPLSVLGKLPFMERYNFSYNNLTLCASDIHPDVLESAFFGSVNSCPIAADPHFFRRKNNGHNKGMELALVLTFSMIFMLAGLLFLAFGCRRKSKMWQVKQTSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYSGFLPGGIHVAVKVLVVGSTLTDQEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWDESDNNGIQNAGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDEEIALGSPGYVPPEFSQQEFDSPTTKSDVYCYGVVLFELVTGKKPVGEDYPDDKESTLVSWVRGLVKKNQASRAIDPKIRDTGLDEQMEEALKIGYLCTADLPAKRPTMQQIVGLLKDIEPVSSN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241972g00001 492 Pfam Protein tyrosine and serine/threonine kinase 189 481 IPR001245 GO:0004672|GO:0006468
Stsc241972g00001 492 ProSiteProfiles Protein kinase domain profile. 185 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241972g00001 492 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 488 - -
Stsc241972g00001 492 FunFam Putative LRR receptor-like serine/threonine-protein kinase 146 260 - -
Stsc241972g00001 492 SUPERFAMILY Protein kinase-like (PK-like) 162 483 IPR011009 -
Stsc241972g00001 492 Gene3D Phosphorylase Kinase; domain 1 145 260 - -
Stsc241972g00001 492 SUPERFAMILY L domain-like 2 53 - -
Stsc241972g00001 492 Gene3D Ribonuclease Inhibitor 1 59 IPR032675 -
Stsc241972g00001 492 Gene3D Transferase(Phosphotransferase) domain 1 261 491 - -
Stsc241972g00001 492 ProSiteProfiles Leucine-rich repeat profile. 15 36 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241972g00001 Stsc-Chr241972 7135 9447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241972g00001 2 487 Receptor kinase-like Gene Family AT4G39400 35.478 5.31e-82 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Stsc241972g00001 PK_Tyr_Ser-Thr 5.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241972g00001 - - adu:107459185 954.896