Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241971g00006 ATGAACAACACAACTACTAGTGATTCTTCTCCAGGATTCCTTGGATCCAATAACATAAGTGGATTTGGCTATGGCATTGGAATCTCAATTGGGATTCTCCTACTCATCACAACAATCACACTCACCTCATACTTTTGCACAAGAACACAAGTTCCCAACAATAGTACTAGGAGGAGGAGTAATCCTACGCCGGGTTCAAGGATGACCACCCAAGTATTCCTTGAACCTCAACACGCTGTGGTCGATGTGGGACTTGATGAAGCAACAATTCTTGGGTATCCAAAGATGCTTTACTCAGAAGCAAAGAAACTCAGCAAGAAACCTTATGATGATTCAACATCATGCTGCTCAATTTGTCTTGGAGATTATAAGGGGAGTGATGTGCTTAGAATTTTACCAGATTGTGAGCATGTTTTTCATCTAAAGTGCATAGATCCATGGCTGAGATTGCATCCAACTTGTCCTCTTTGTAGAACATCACCAATTCCAACACCACTTTCTACTCCTCTTGCTGAAGTTGTTCCATTAGCAACAAGAAGAGATTGA 546 0.4121 MNNTTTSDSSPGFLGSNNISGFGYGIGISIGILLLITTITLTSYFCTRTQVPNNSTRRRSNPTPGSRMTTQVFLEPQHAVVDVGLDEATILGYPKMLYSEAKKLSKKPYDDSTSCCSICLGDYKGSDVLRILPDCEHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241971g00006 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 162 IPR013083 -
Stsc241971g00006 181 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 172 IPR045899 -
Stsc241971g00006 181 CDD RING-H2_EL5-like 115 158 - -
Stsc241971g00006 181 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Stsc241971g00006 181 SMART ring_2 116 157 IPR001841 -
Stsc241971g00006 181 Pfam Ring finger domain 116 158 IPR001841 -
Stsc241971g00006 181 SUPERFAMILY RING/U-box 115 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241971g00006 Stsc-Chr241971 38787 39450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241971g00006 1 179 C3H Transcription Factor Family AT5G06490 50.000 5.77e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241971g00006 - - gmx:100796149 225.713