Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241971g00004 ATGGCTATGGAAACTGCATATCTGAAAGAACATGAAGGAATTGTTCACAATTCAGTTGGACAGCTGTCATCAGCAGCTTCTTCATGGTGGAGTATTAGTGCCTTTGGATCTCAAAATCAATCATCTTCAGTTTATGGAGATTCTTCTTCTACTCCTTCTAATAACCAAATAATTATGAAACCATTTTCATTGGAGCTTCCTAGCAATAATAATTACATTGACCACCTTGCTTCTTCCACTAATATTAAGCAACAACAGTTCTTGGATAAAGGACCAACAACACAATTTACCATCTTTCCAGAAGATTGCAAGATTTCAGGTGAATCACAGAAGTCTCATCAAGCAGCATTATCTTTGCAGACATCAATTTCTGACCCTCGGAACCGTTTTGACCTTGGATTCACTCACCCTATGGTACAAAATTTCTCAAAAATTTGTGCCAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCCTATGCACCTCAAATTTCGGGGCGTATAATGCTGCCACTAAACTTGACATCAGATGAAGGACCAACTTACGTGAATGCCAAGCAATACCATGGAATCATAAGGCGCAGGCAGTCGCGTGCGAAAGCTGTTCTTGCCAATAAACTTGTAAAACGTCGCAAGCCATATATGCATGAATCGCGCCATCTCCACGCGATGCGGCGGCCAAGAGGATGCGGTGGCAGGTTCTTGAACACAAGAAACTCCACCACCAACAATGGAAATGGCAAGAGTGGAAGTGAAGCAAACAAAAAGGGACTTGTCCAACAACTGCATTCTAGTGGCTCTCAGAGTTCTGAAGTCCTACAATCCTCGGCCGGAACCTTGAACTCGTCGAAGGAAACAAATGGAAGCAGTCCAAACATTTCATCAGAGGTGACAAGCATGTATTCATCAAGAGGAGGAATTGATGGATTTTCCATCAATCATATTGGAACTTCTATGCACTCTTTTGCAGATATGATGGAAAATGGACATGGACATGGCATGATCATGCCCCCGAAATGGGTTTCGGCTGCAGCCGGAAACTGCTGCAACCTTAATGTTTGA 1068 0.4232 MAMETAYLKEHEGIVHNSVGQLSSAASSWWSISAFGSQNQSSSVYGDSSSTPSNNQIIMKPFSLELPSNNNYIDHLASSTNIKQQQFLDKGPTTQFTIFPEDCKISGESQKSHQAALSLQTSISDPRNRFDLGFTHPMVQNFSKICAKYPYMDQFYGLFSAYAPQISGRIMLPLNLTSDEGPTYVNAKQYHGIIRRRQSRAKAVLANKLVKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSTTNNGNGKSGSEANKKGLVQQLHSSGSQSSEVLQSSAGTLNSSKETNGSSPNISSEVTSMYSSRGGIDGFSINHIGTSMHSFADMMENGHGHGMIMPPKWVSAAAGNCCNLNV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241971g00004 355 Gene3D - 180 240 - -
Stsc241971g00004 355 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Stsc241971g00004 355 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700|GO:0006355
Stsc241971g00004 355 SMART cbf3 178 239 IPR001289 GO:0003700|GO:0006355
Stsc241971g00004 355 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700|GO:0006355
Stsc241971g00004 355 MobiDBLite consensus disorder prediction 236 302 - -
Stsc241971g00004 355 MobiDBLite consensus disorder prediction 220 302 - -
Stsc241971g00004 355 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 182 236 IPR001289 GO:0003700|GO:0006355
Stsc241971g00004 355 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 23 302 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241971g00004 Stsc-Chr241971 24625 28434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241971g00004 20 353 CCAAT-HAP2 Transcription Factor Family AT3G05690 38.857 1.46e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc241971g00004 CBFB_NFYA 5.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241971g00004 K08064 - gmx:100808195 396.356