Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241971g00003 ATGGCTGAAAAACTTTATGGTGGAGCTTACCTCTCTTCCTTTGTTGATGCTATTTTGGACAACCTGTCTAAAATACTTGAAGATGACTCTGTCCTCAATGGAAACTACTCTGCCATGGAGTTCCTTCCAAGGTTGGAGGAATGTTTGCTTGATGTTGCTCCTGTTCTTGATGATGCTGAGCTGAAGCAGTTCACTGACAAGAGAGTCAAGAGGTGGCTTGCTGATCTCCAAGATGCTCTCTATTTTGCTGATGACTTCCTCGATGAACTCTCCACTAAAGCTGCCACTGCCACACAAACGGATTCAGGTATCTCTGCATCATGTTCTCGTGTTGTTGATTCATATATTGAAGATACTGGTGACATGGAAAGAATAGTTGGAAGACTAGAGTCTGTTATAGCACGCAAAAAATTACTTCGTCTGAAGGAGACTGCCAAGGTGGACATGTCATGGAAAATTCCATCCACATCTCTGGTTGAACCATCGGAGATATGTGGCAGGAAGGAAGACAAGGAGGCCATACTGAAACTGTTGATGGATGATCATGATGCTGATTTATCTGTGATTCCCATTGTTGGCATGGGTGGGATAGGAAAGACCACTTTGGCTCAAATGCTTTACCACGATGACAAAGTGAAGAAGAAGTTTGATTTCCGAGGTTGGGTTTGTGTGTCTGAAGAGTTTGATGTTGTCAAGGTCACCAAGACTATAATCGAGGCAATAACTTCAAGTTCGTGTAACCTGACAGATTTGAATTTACTTCAACATGATTTGAAGGAAAAGTTGTCCAGGAAAAAGTTCTTTGTTGTGCTGGACGACGTATGGAATGAAAATTATGATGATTGGAATATGCTTCTAAAACCTTTTCAAAAAGGGGTTAAGGGAAGTAAAATTCTCATAACTACTAGAAGTAAAAAAGTGGCTTCTTTGGTGGAAACTGTTTCACCTCATGAACTGAGGTCATTGTCCGACGAAGATTGTTGGTTGGTGTTTTCAAAACATGCACGTCTTTCAACTACTTCTATGGAGAATCCAACCCTGATAAAAATCGGCAAAGATATCATAAAGAAGTGCGATGGATTGCCATTGGCAGCTCAAGCACTTGGAGGTCTATTGCGTGGAAATTCTGATGTCAAGTACTGGAATCATTTGCTGAAGAGTGAGATCTGGGGACTCTCCGATGATGGAATAAAGGGAATTAATGTTGCTCCAGCGTTAAGAATAAGTTATTATTTTCTGCCATCATATTTGAAGCAGTGCTTTGTTTATTGTTCCTTGTATCCCAAGGACTATGAATTTAGCAAAGATGAATTGATATTGCTATGGATGGCAGAGAATTTTTTGCAACCAAAAGGAAAAAAGACTATGGAAGAAGTTGGCAATGAATATTTTGATGAATTAATTGCGAGATCATTTTTCCAACCTCACAGTACTCGCCAAAAGATATTTGTGATGCATGATCTCGTGCATGATTTGGCAATGATCTTTGCTGGAGAATTCTATTATCGAGCTGAAGATCTTGAGAAGGCTGATGAGATTGATAGTAAAACTCATCATTTGTCACATAATGCCACAGGCAATTATCCAATTTCAAAACTTTTGGCAGTTTGTGACAGAGTGAAAGATACAAGGACATTTCTTGAAATCAATCTGAAGCAGTGGATTCCATTCAATATGGAAAACGCACCGTGTATCTTGTTGTCAAAGTTATTGCATCTAAGAGCTTTGTCGTTCACTTCTTTTCCTCTTGAGTCACTGCCGGATTCAATAGGTGGGTTGATTCATCTCCGCTACTTGGATCTGTCTGAAACCTACATCGTGACTTTGCCAGAGTCCTTGGGTGAGCTGTACAATTTGCAAACACTGAAGCTGGTTAGATGTTCAAACCTAAAAATGCTTCCAGTTGGCATGAAAGATCTTGTAAATTTACGCCATCTCGACATTAGAGGTACTAATTTGCATGAGATGCCGAAAGGCATGAACAAATTGAAAAAACTACAGTTTTTGAGTGACTATGTTGTTGGGAAGAATGAAGAGAATAAGATTAAAGAATTGGGAGCCCTTGCAGATCTACGCAAATCAATTCACATTGCCAACTTGGAGAATGTGGTCAACAGCAGTGAAGCTTTGGATGCAAGAATGTCTGATAAGGATGGCATTGATTCTATGACGTTGAGTTGGTGGAATGAAGACGAGAATGTAGTTGATTCCCAAGTAGAAGAAGATATTCTGGACAAGTTACGACCTCATCATAATTTGAAAGAACTAGAAATCATTGGTTACAGGGGTACAAGATTTCCAGATTGGTTGGGACATTCTACTTACAACAACATCACCGAAATAAGATTGTTTGGTTGCAGAAATTGTTGTACGCTTCCTTCACTTGGACAATTGCCCTCTTTGAAGTACCTCAAAATTTCTGATTTTGAAATGCTTGGGACTGTGGGTGCTGAGTTTTACCAGAAGGAGGAATCTTGTGTGGAGAAACCATTTCCAAAGCTTGAAACTCTTGAGTTTAAGTCAATGAATTGCTGGAAGGAGTGGTGTCCAATGAAGTTAAATTCATTTCCTCGACTTAAGCAGCTTATCATAAGGAAGTGTCCGATGTTGAGAGGAGAATTGCCGAATTATCTACCATCTTTGGAGTCACTTGAGATTGAGAATTGCGAGCAGCTCAGTTGTAGTCTTCCAAGAGCTCCAGCGATGACATTATTAGGAATAGAAGGTGCCAATGAAGTGAGAATTGGGGAGCTACCTCCTTTACTGCGTGATCTATCAATTGGAGGAAACCATCAAGTGGAGTGGGTGGTGGAGGCCATTACGCACAAGCAACTGACTTGCCTCACTTTTTTAAGCATCTCAGATTGTTCCTCCAACATATCGTTTCCAGTGAGTGCTATTCCCCCATCACTAGAGAACTTGAGGATCATTAGATGCAGAAAATTAGAATTGCAAATGGATGGCCAACATCACTCGCTGCAGGCATTATCAATAACTGAAAGCTGTGATTCAGTTACATCCTTCTCCTTGTTGGATGCCTTTCCAAATCTCATGCGTGTTGAAATCTGGAACTGTGAAAAGATGGAGTCTATTGTGGTTTCAGGCTCTCTTTCATGTCTCCGTTCTTTATGGATCAACCATTGTGGGAGTTTGAAATCCATGTCAAAGGTATGGATGGCAGCACCTCAGCTGGATATTCTCGAAATAGGCCGTTGCCCAGAGATTGATTTGTCTGCTACAGGGGACCCAAACTGTAGCCTGAGATGTCTTCTAATCTCCTACTACGAGAAACTGGCCAGCTCTGCACCATTCATGAATTCGCAATTTCATGGGCTTACTCATCTTCATATTTTTGGTGAAGACGAGAGTGTGAAGTGCCTCCCAAAGGAAGGTTGGTTGCCTGCCTCCCTTGAGCATCTGTCACTGAGTGGCTTTAAAAGTGTGGAGACGTTGGATTGCAAGGAATTTACCCACCTCACCTCCCTCCAAACATTAGGTATTTATGAATGTCCCAAGTTGGAAAACATTGATGGAGAAAAGCTACCTGCCTCTCTAATACGACTCAGTATCAGTGATACTCCTTTGCTGGGTAAACGGTGCGAGATGAAGGACCCACAGATTTGGCCCAAAATTTCCCACATCCAAGGAATTGAAGTTGATCGCAGATGGATTTGGTAA 3678 0.4116 MAEKLYGGAYLSSFVDAILDNLSKILEDDSVLNGNYSAMEFLPRLEECLLDVAPVLDDAELKQFTDKRVKRWLADLQDALYFADDFLDELSTKAATATQTDSGISASCSRVVDSYIEDTGDMERIVGRLESVIARKKLLRLKETAKVDMSWKIPSTSLVEPSEICGRKEDKEAILKLLMDDHDADLSVIPIVGMGGIGKTTLAQMLYHDDKVKKKFDFRGWVCVSEEFDVVKVTKTIIEAITSSSCNLTDLNLLQHDLKEKLSRKKFFVVLDDVWNENYDDWNMLLKPFQKGVKGSKILITTRSKKVASLVETVSPHELRSLSDEDCWLVFSKHARLSTTSMENPTLIKIGKDIIKKCDGLPLAAQALGGLLRGNSDVKYWNHLLKSEIWGLSDDGIKGINVAPALRISYYFLPSYLKQCFVYCSLYPKDYEFSKDELILLWMAENFLQPKGKKTMEEVGNEYFDELIARSFFQPHSTRQKIFVMHDLVHDLAMIFAGEFYYRAEDLEKADEIDSKTHHLSHNATGNYPISKLLAVCDRVKDTRTFLEINLKQWIPFNMENAPCILLSKLLHLRALSFTSFPLESLPDSIGGLIHLRYLDLSETYIVTLPESLGELYNLQTLKLVRCSNLKMLPVGMKDLVNLRHLDIRGTNLHEMPKGMNKLKKLQFLSDYVVGKNEENKIKELGALADLRKSIHIANLENVVNSSEALDARMSDKDGIDSMTLSWWNEDENVVDSQVEEDILDKLRPHHNLKELEIIGYRGTRFPDWLGHSTYNNITEIRLFGCRNCCTLPSLGQLPSLKYLKISDFEMLGTVGAEFYQKEESCVEKPFPKLETLEFKSMNCWKEWCPMKLNSFPRLKQLIIRKCPMLRGELPNYLPSLESLEIENCEQLSCSLPRAPAMTLLGIEGANEVRIGELPPLLRDLSIGGNHQVEWVVEAITHKQLTCLTFLSISDCSSNISFPVSAIPPSLENLRIIRCRKLELQMDGQHHSLQALSITESCDSVTSFSLLDAFPNLMRVEIWNCEKMESIVVSGSLSCLRSLWINHCGSLKSMSKVWMAAPQLDILEIGRCPEIDLSATGDPNCSLRCLLISYYEKLASSAPFMNSQFHGLTHLHIFGEDESVKCLPKEGWLPASLEHLSLSGFKSVETLDCKEFTHLTSLQTLGIYECPKLENIDGEKLPASLIRLSISDTPLLGKRCEMKDPQIWPKISHIQGIEVDRRWIW 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241971g00003 1225 Gene3D - 15 125 - -
Stsc241971g00003 1225 PANTHER DISEASE RESISTANCE PROTEIN RP 53 891 IPR044974 GO:0006952
Stsc241971g00003 1225 Gene3D - 146 315 IPR027417 -
Stsc241971g00003 1225 PRINTS Disease resistance protein signature 188 203 - -
Stsc241971g00003 1225 PRINTS Disease resistance protein signature 261 275 - -
Stsc241971g00003 1225 PRINTS Disease resistance protein signature 358 372 - -
Stsc241971g00003 1225 PRINTS Disease resistance protein signature 876 892 - -
Stsc241971g00003 1225 Gene3D - 321 408 IPR042197 -
Stsc241971g00003 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 424 IPR027417 -
Stsc241971g00003 1225 Pfam NB-ARC domain 168 386 IPR002182 GO:0043531
Stsc241971g00003 1225 Gene3D - 409 494 IPR036388 -
Stsc241971g00003 1225 Gene3D Ribonuclease Inhibitor 536 906 IPR032675 -
Stsc241971g00003 1225 SMART LRR_typ_2 640 663 IPR003591 -
Stsc241971g00003 1225 SMART LRR_typ_2 593 616 IPR003591 -
Stsc241971g00003 1225 Gene3D Ribonuclease Inhibitor 1078 1206 IPR032675 -
Stsc241971g00003 1225 Gene3D Ribonuclease Inhibitor 984 1077 IPR032675 -
Stsc241971g00003 1225 SUPERFAMILY L domain-like 484 897 - -
Stsc241971g00003 1225 FunFam Probable disease resistance protein At1g63360 410 495 - -
Stsc241971g00003 1225 FunFam Probable disease resistance protein At1g61300 150 315 - -
Stsc241971g00003 1225 Pfam Rx N-terminal domain 14 98 IPR041118 -
Stsc241971g00003 1225 SUPERFAMILY L domain-like 920 1210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241971g00003 Stsc-Chr241971 20192 24180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241971g00003 178 374 WRKY Transcription Factor Family AT5G45050 26.214 4.28e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241971g00003 - - aip:107626318 1815.05